Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25920 | 5' | -54.4 | NC_005337.1 | + | 36716 | 0.77 | 0.43433 |
Target: 5'- cCUCCGCGAgGAUCUUCUCGGugAa-- -3' miRNA: 3'- -GGGGCGCUaCUGGAAGAGCCugUagg -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 3260 | 0.69 | 0.863372 |
Target: 5'- aCUCUGUGGaGGCgUcgaUCUCGGACAUgCCg -3' miRNA: 3'- -GGGGCGCUaCUGgA---AGAGCCUGUA-GG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 30107 | 0.68 | 0.878069 |
Target: 5'- gCgCGCGcaccuUGACCUUgUCGGugAggUCCg -3' miRNA: 3'- gGgGCGCu----ACUGGAAgAGCCugU--AGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 91086 | 0.66 | 0.958952 |
Target: 5'- --gCGCGGUGACCgugCUCGGgauggGCGUguaCCg -3' miRNA: 3'- gggGCGCUACUGGaa-GAGCC-----UGUA---GG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 69102 | 0.72 | 0.700858 |
Target: 5'- aCCUCGUGGUGcACCUcgUCUgCGGGCGagCCg -3' miRNA: 3'- -GGGGCGCUAC-UGGA--AGA-GCCUGUa-GG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 49253 | 0.72 | 0.720802 |
Target: 5'- aCCCGCGAgGGCUcgCUggUGGACAUCg -3' miRNA: 3'- gGGGCGCUaCUGGaaGA--GCCUGUAGg -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 53046 | 0.71 | 0.750126 |
Target: 5'- gCCgGCGcaacGGCCUggUCUCGGACA-CCg -3' miRNA: 3'- gGGgCGCua--CUGGA--AGAGCCUGUaGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 43100 | 0.71 | 0.750126 |
Target: 5'- gCCCGgGAUGAagUUCgUGGACAUCUc -3' miRNA: 3'- gGGGCgCUACUggAAGaGCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 42493 | 0.7 | 0.814501 |
Target: 5'- aCgCGCGAgcuCCUgaagCUgCGGACGUCCa -3' miRNA: 3'- gGgGCGCUacuGGAa---GA-GCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 131579 | 0.69 | 0.855709 |
Target: 5'- cCUCCGCGuccccacGCCgcagCUcCGGACGUCCu -3' miRNA: 3'- -GGGGCGCuac----UGGaa--GA-GCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 84663 | 0.7 | 0.831535 |
Target: 5'- gUCCGCG-UGAUCUggUCgUCGGACGgggCCg -3' miRNA: 3'- gGGGCGCuACUGGA--AG-AGCCUGUa--GG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 127159 | 0.7 | 0.805732 |
Target: 5'- aUCCGCGcgGGCg----CGGACGUCCg -3' miRNA: 3'- gGGGCGCuaCUGgaagaGCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 86752 | 0.76 | 0.470993 |
Target: 5'- gUCCCGCuccggcacGAUGGCCaUCUCcGGCGUCCg -3' miRNA: 3'- -GGGGCG--------CUACUGGaAGAGcCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 125093 | 0.69 | 0.839783 |
Target: 5'- aCCgCGUGGccaagcaccUGACCggggUCUCcGGCAUCCa -3' miRNA: 3'- -GGgGCGCU---------ACUGGa---AGAGcCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 31272 | 0.73 | 0.660348 |
Target: 5'- aCCUGCG--GGCCgcgCUCGGGCAcgUCCg -3' miRNA: 3'- gGGGCGCuaCUGGaa-GAGCCUGU--AGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 51918 | 0.7 | 0.805732 |
Target: 5'- -gUCGCGGccGACCUUCggcaCGGGCAUCg -3' miRNA: 3'- ggGGCGCUa-CUGGAAGa---GCCUGUAGg -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 127241 | 0.69 | 0.847844 |
Target: 5'- gCCCCGaCGugcucGGCCUgaugCUggaggcgggcgCGGACGUCCg -3' miRNA: 3'- -GGGGC-GCua---CUGGAa---GA-----------GCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 77815 | 0.68 | 0.877354 |
Target: 5'- gCCCGUa--GACCUuggUCUCGGccaccgcGCGUCCa -3' miRNA: 3'- gGGGCGcuaCUGGA---AGAGCC-------UGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 91192 | 0.72 | 0.700858 |
Target: 5'- ---gGCGAUGGCCgcggUGGACAUCCg -3' miRNA: 3'- ggggCGCUACUGGaagaGCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 113504 | 0.71 | 0.740443 |
Target: 5'- uCCCCGCGAagcgcgUGGCCgcggccCUgGGcAUAUCCa -3' miRNA: 3'- -GGGGCGCU------ACUGGaa----GAgCC-UGUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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