miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 131579 0.69 0.855709
Target:  5'- cCUCCGCGuccccacGCCgcagCUcCGGACGUCCu -3'
miRNA:   3'- -GGGGCGCuac----UGGaa--GA-GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 3260 0.69 0.863372
Target:  5'- aCUCUGUGGaGGCgUcgaUCUCGGACAUgCCg -3'
miRNA:   3'- -GGGGCGCUaCUGgA---AGAGCCUGUA-GG- -5'
25920 5' -54.4 NC_005337.1 + 90692 0.67 0.927806
Target:  5'- uCCCCGCGGUccaggaagacGACCagcUUCUCuguGGcggagacccGCGUCCa -3'
miRNA:   3'- -GGGGCGCUA----------CUGG---AAGAG---CC---------UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 122605 0.67 0.916779
Target:  5'- aCCaCGCGGgcggcggcgUGuuCUUCUCGGACGcgCCc -3'
miRNA:   3'- gGG-GCGCU---------ACugGAAGAGCCUGUa-GG- -5'
25920 5' -54.4 NC_005337.1 + 24917 0.66 0.958952
Target:  5'- cCUCCGUGuacUGcACCgcCUCGGGCGUgCu -3'
miRNA:   3'- -GGGGCGCu--AC-UGGaaGAGCCUGUAgG- -5'
25920 5' -54.4 NC_005337.1 + 91405 0.66 0.955197
Target:  5'- gCCCCGCuccagcACCUUCgucacgCaGGCGUCCg -3'
miRNA:   3'- -GGGGCGcuac--UGGAAGa-----GcCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 19331 0.74 0.616406
Target:  5'- gUCUGCGAUGGCCagcagcuccgcguggCUCaGGGCGUCCa -3'
miRNA:   3'- gGGGCGCUACUGGaa-------------GAG-CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 131821 0.67 0.922411
Target:  5'- aCCCCGCGuuccacucgGugC-UCUCGGAgcugacCAUCUc -3'
miRNA:   3'- -GGGGCGCua-------CugGaAGAGCCU------GUAGG- -5'
25920 5' -54.4 NC_005337.1 + 69303 0.77 0.461677
Target:  5'- uUCgCGCGGgagaaGGCCUUCUCGGugGUCa -3'
miRNA:   3'- -GGgGCGCUa----CUGGAAGAGCCugUAGg -5'
25920 5' -54.4 NC_005337.1 + 79003 0.73 0.629696
Target:  5'- gCCCCgGUGAUGGCggagaaCUUCUUGGACAUg- -3'
miRNA:   3'- -GGGG-CGCUACUG------GAAGAGCCUGUAgg -5'
25920 5' -54.4 NC_005337.1 + 18396 0.71 0.769173
Target:  5'- -gCCGCGGUacucGACCaUCUCGGACGg-- -3'
miRNA:   3'- ggGGCGCUA----CUGGaAGAGCCUGUagg -5'
25920 5' -54.4 NC_005337.1 + 97809 0.67 0.916779
Target:  5'- gUCCaCGGUGuuCUUCUCGGGCAcggggcuggaccUCCc -3'
miRNA:   3'- gGGGcGCUACugGAAGAGCCUGU------------AGG- -5'
25920 5' -54.4 NC_005337.1 + 36670 0.67 0.916779
Target:  5'- gCCgGCGAUGGCCagcgacUUCagcaCGG-CGUCCa -3'
miRNA:   3'- gGGgCGCUACUGG------AAGa---GCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 48164 0.68 0.910908
Target:  5'- gCCCCGCGAgugcuggGACCcggagugcgUCUCcggGGACGUg- -3'
miRNA:   3'- -GGGGCGCUa------CUGGa--------AGAG---CCUGUAgg -5'
25920 5' -54.4 NC_005337.1 + 124953 0.68 0.910908
Target:  5'- gUCCCGCGuc-GCCggUCUCGG-CAuguUCCu -3'
miRNA:   3'- -GGGGCGCuacUGGa-AGAGCCuGU---AGG- -5'
25920 5' -54.4 NC_005337.1 + 103583 0.68 0.904802
Target:  5'- uUCCGCGAcggguacgUGGCCUccUCgcuggUGGGCAUCa -3'
miRNA:   3'- gGGGCGCU--------ACUGGA--AGa----GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 35895 0.68 0.904802
Target:  5'- uCCuuGaCGAUGACCagCaCGG-CGUCCa -3'
miRNA:   3'- -GGggC-GCUACUGGaaGaGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 128211 0.7 0.814501
Target:  5'- uCCUgGCGccgcucGUGGCCgcgggCgCGGACAUCCa -3'
miRNA:   3'- -GGGgCGC------UACUGGaa---GaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 17829 0.7 0.787732
Target:  5'- gCgCGCGgcGAucuCCUUCUCGGACccgCCg -3'
miRNA:   3'- gGgGCGCuaCU---GGAAGAGCCUGua-GG- -5'
25920 5' -54.4 NC_005337.1 + 25274 0.71 0.778518
Target:  5'- uUCCGCGA-GcCCUcCUCGGccaGCGUCCg -3'
miRNA:   3'- gGGGCGCUaCuGGAaGAGCC---UGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.