miRNA display CGI


Results 61 - 80 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 79003 0.73 0.629696
Target:  5'- gCCCCgGUGAUGGCggagaaCUUCUUGGACAUg- -3'
miRNA:   3'- -GGGG-CGCUACUG------GAAGAGCCUGUAgg -5'
25920 5' -54.4 NC_005337.1 + 19331 0.74 0.616406
Target:  5'- gUCUGCGAUGGCCagcagcuccgcguggCUCaGGGCGUCCa -3'
miRNA:   3'- gGGGCGCUACUGGaa-------------GAG-CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 11997 0.74 0.59906
Target:  5'- cCUCCGCGucccgGuCCUUgCUCuGGACGUCCa -3'
miRNA:   3'- -GGGGCGCua---CuGGAA-GAG-CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 35895 0.68 0.904802
Target:  5'- uCCuuGaCGAUGACCagCaCGG-CGUCCa -3'
miRNA:   3'- -GGggC-GCUACUGGaaGaGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 103583 0.68 0.904802
Target:  5'- uUCCGCGAcggguacgUGGCCUccUCgcuggUGGGCAUCa -3'
miRNA:   3'- gGGGCGCU--------ACUGGA--AGa----GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 124953 0.68 0.910908
Target:  5'- gUCCCGCGuc-GCCggUCUCGG-CAuguUCCu -3'
miRNA:   3'- -GGGGCGCuacUGGa-AGAGCCuGU---AGG- -5'
25920 5' -54.4 NC_005337.1 + 1280 0.66 0.951215
Target:  5'- gCCCGCGGaGGCgggUCggCGGGCAgguugUCCa -3'
miRNA:   3'- gGGGCGCUaCUGga-AGa-GCCUGU-----AGG- -5'
25920 5' -54.4 NC_005337.1 + 60376 0.66 0.950804
Target:  5'- aCCCCGaucacguacgcguUGAUGACC---UCGGGCGauggaUCCa -3'
miRNA:   3'- -GGGGC-------------GCUACUGGaagAGCCUGU-----AGG- -5'
25920 5' -54.4 NC_005337.1 + 131444 0.66 0.947003
Target:  5'- uCUCCGCGGaGGCCgcgCUCGGccuggGCuucUCCu -3'
miRNA:   3'- -GGGGCGCUaCUGGaa-GAGCC-----UGu--AGG- -5'
25920 5' -54.4 NC_005337.1 + 104773 0.66 0.947003
Target:  5'- aUCUCGCacggcgcGGCCUcaccgUCUCGGAgAUCCu -3'
miRNA:   3'- -GGGGCGcua----CUGGA-----AGAGCCUgUAGG- -5'
25920 5' -54.4 NC_005337.1 + 97619 0.66 0.947003
Target:  5'- -gCCGCG---GCCUUCgcggacgGGACGUCCa -3'
miRNA:   3'- ggGGCGCuacUGGAAGag-----CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 71881 0.66 0.947003
Target:  5'- gCuuGCGAccgugGACUUUCUCGuccgccGCGUCCu -3'
miRNA:   3'- gGggCGCUa----CUGGAAGAGCc-----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 29670 0.66 0.947003
Target:  5'- cUCCCGCGGUGgcGCCguaugCUCGccgccGACGaCCg -3'
miRNA:   3'- -GGGGCGCUAC--UGGaa---GAGC-----CUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 83348 0.66 0.942559
Target:  5'- gCCCCGgGAggccGACUggCUgCGGACcggCCg -3'
miRNA:   3'- -GGGGCgCUa---CUGGaaGA-GCCUGua-GG- -5'
25920 5' -54.4 NC_005337.1 + 3108 0.66 0.942559
Target:  5'- aCUCCGCGAccgcGACCgcggC-CGGccucGCGUCCa -3'
miRNA:   3'- -GGGGCGCUa---CUGGaa--GaGCC----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 38858 0.66 0.942559
Target:  5'- gCCCCGCG-UGACgcUCgugCGGGCGcacaCCg -3'
miRNA:   3'- -GGGGCGCuACUGgaAGa--GCCUGUa---GG- -5'
25920 5' -54.4 NC_005337.1 + 43451 0.67 0.916779
Target:  5'- aCCCCGCGGUGuuCguggaCGGguucaGCGUCCu -3'
miRNA:   3'- -GGGGCGCUACugGaaga-GCC-----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 97809 0.67 0.916779
Target:  5'- gUCCaCGGUGuuCUUCUCGGGCAcggggcuggaccUCCc -3'
miRNA:   3'- gGGGcGCUACugGAAGAGCCUGU------------AGG- -5'
25920 5' -54.4 NC_005337.1 + 36670 0.67 0.916779
Target:  5'- gCCgGCGAUGGCCagcgacUUCagcaCGG-CGUCCa -3'
miRNA:   3'- gGGgCGCUACUGG------AAGa---GCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 48164 0.68 0.910908
Target:  5'- gCCCCGCGAgugcuggGACCcggagugcgUCUCcggGGACGUg- -3'
miRNA:   3'- -GGGGCGCUa------CUGGa--------AGAG---CCUGUAgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.