miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 110553 0.67 0.932961
Target:  5'- gCUCCGCGgcGGCggUCa-GGAUGUCCg -3'
miRNA:   3'- -GGGGCGCuaCUGgaAGagCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 38858 0.66 0.942559
Target:  5'- gCCCCGCG-UGACgcUCgugCGGGCGcacaCCg -3'
miRNA:   3'- -GGGGCGCuACUGgaAGa--GCCUGUa---GG- -5'
25920 5' -54.4 NC_005337.1 + 103583 0.68 0.904802
Target:  5'- uUCCGCGAcggguacgUGGCCUccUCgcuggUGGGCAUCa -3'
miRNA:   3'- gGGGCGCU--------ACUGGA--AGa----GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 124953 0.68 0.910908
Target:  5'- gUCCCGCGuc-GCCggUCUCGG-CAuguUCCu -3'
miRNA:   3'- -GGGGCGCuacUGGa-AGAGCCuGU---AGG- -5'
25920 5' -54.4 NC_005337.1 + 48164 0.68 0.910908
Target:  5'- gCCCCGCGAgugcuggGACCcggagugcgUCUCcggGGACGUg- -3'
miRNA:   3'- -GGGGCGCUa------CUGGa--------AGAG---CCUGUAgg -5'
25920 5' -54.4 NC_005337.1 + 36670 0.67 0.916779
Target:  5'- gCCgGCGAUGGCCagcgacUUCagcaCGG-CGUCCa -3'
miRNA:   3'- gGGgCGCUACUGG------AAGa---GCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 97809 0.67 0.916779
Target:  5'- gUCCaCGGUGuuCUUCUCGGGCAcggggcuggaccUCCc -3'
miRNA:   3'- gGGGcGCUACugGAAGAGCCUGU------------AGG- -5'
25920 5' -54.4 NC_005337.1 + 43451 0.67 0.916779
Target:  5'- aCCCCGCGGUGuuCguggaCGGguucaGCGUCCu -3'
miRNA:   3'- -GGGGCGCUACugGaaga-GCC-----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 131821 0.67 0.922411
Target:  5'- aCCCCGCGuuccacucgGugC-UCUCGGAgcugacCAUCUc -3'
miRNA:   3'- -GGGGCGCua-------CugGaAGAGCCU------GUAGG- -5'
25920 5' -54.4 NC_005337.1 + 61887 0.67 0.927806
Target:  5'- aCCCCGgGGgcucgcUGACCgcgaCGGcCGUCCg -3'
miRNA:   3'- -GGGGCgCU------ACUGGaagaGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 6462 0.67 0.927806
Target:  5'- aCCCCcaguuggugGCGGUGACCagCgcgCGGACGa-- -3'
miRNA:   3'- -GGGG---------CGCUACUGGaaGa--GCCUGUagg -5'
25920 5' -54.4 NC_005337.1 + 1280 0.66 0.951215
Target:  5'- gCCCGCGGaGGCgggUCggCGGGCAgguugUCCa -3'
miRNA:   3'- gGGGCGCUaCUGga-AGa-GCCUGU-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.