miRNA display CGI


Results 1 - 20 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25921 3' -60.3 NC_005337.1 + 2176 0.66 0.724736
Target:  5'- --aCGGCgccGaCGCGCAcGGCgCAGGCGGcGg -3'
miRNA:   3'- ggaGCCGa--C-GCGCGU-CCG-GUUCGUC-C- -5'
25921 3' -60.3 NC_005337.1 + 74666 0.66 0.724736
Target:  5'- aCCUucgUGGaCUGCgugacGCGCgAGGUCGAGgAGGa -3'
miRNA:   3'- -GGA---GCC-GACG-----CGCG-UCCGGUUCgUCC- -5'
25921 3' -60.3 NC_005337.1 + 80428 0.66 0.724736
Target:  5'- gCCgUCcGCgGCGCGCAGcGCCA-GCcGGu -3'
miRNA:   3'- -GG-AGcCGaCGCGCGUC-CGGUuCGuCC- -5'
25921 3' -60.3 NC_005337.1 + 64008 0.66 0.724736
Target:  5'- gCCgCGGCUuccggcacaGCGCGCAGcGCguGGCGu- -3'
miRNA:   3'- -GGaGCCGA---------CGCGCGUC-CGguUCGUcc -5'
25921 3' -60.3 NC_005337.1 + 50951 0.66 0.724736
Target:  5'- gCCUCGcGCcGCGCcccuaGCcGGUCGaccgGGCGGGg -3'
miRNA:   3'- -GGAGC-CGaCGCG-----CGuCCGGU----UCGUCC- -5'
25921 3' -60.3 NC_005337.1 + 91394 0.66 0.724736
Target:  5'- aCCUCGGCgGCGCcccgcuccaGCAccuucGUCAcGCAGGc -3'
miRNA:   3'- -GGAGCCGaCGCG---------CGUc----CGGUuCGUCC- -5'
25921 3' -60.3 NC_005337.1 + 102232 0.66 0.723769
Target:  5'- gCC-CGGCUGUgGCGCGugcagacGGCCGGGUg-- -3'
miRNA:   3'- -GGaGCCGACG-CGCGU-------CCGGUUCGucc -5'
25921 3' -60.3 NC_005337.1 + 121563 0.66 0.715031
Target:  5'- uCCUCGaGCgcggcgcGCGCGCGGacGCCAc-CGGGa -3'
miRNA:   3'- -GGAGC-CGa------CGCGCGUC--CGGUucGUCC- -5'
25921 3' -60.3 NC_005337.1 + 16040 0.66 0.715031
Target:  5'- gCUgCGGCgccugccGcCGCGCGGGCCGcugaAGUAGa -3'
miRNA:   3'- gGA-GCCGa------C-GCGCGUCCGGU----UCGUCc -5'
25921 3' -60.3 NC_005337.1 + 95794 0.66 0.715031
Target:  5'- gCUCGGC-GaCGCGC-GGCCcGGCGc- -3'
miRNA:   3'- gGAGCCGaC-GCGCGuCCGGuUCGUcc -5'
25921 3' -60.3 NC_005337.1 + 24196 0.66 0.715031
Target:  5'- gCCguuacCGGCgagGCGCGC--GUCGAGguGGa -3'
miRNA:   3'- -GGa----GCCGa--CGCGCGucCGGUUCguCC- -5'
25921 3' -60.3 NC_005337.1 + 2308 0.66 0.715031
Target:  5'- -gUCGGgaGCGuCGguGGCgGcauuuauccAGCGGGa -3'
miRNA:   3'- ggAGCCgaCGC-GCguCCGgU---------UCGUCC- -5'
25921 3' -60.3 NC_005337.1 + 57228 0.66 0.71113
Target:  5'- aCUCGGCggcuaacgaggccgUGCaccgGCGCugguucgggcacgGGGCCGcGCGGGg -3'
miRNA:   3'- gGAGCCG--------------ACG----CGCG-------------UCCGGUuCGUCC- -5'
25921 3' -60.3 NC_005337.1 + 30641 0.66 0.71113
Target:  5'- uUCUUGGCgagggaggcugccGCGuCGCGGGCCuucCGGGg -3'
miRNA:   3'- -GGAGCCGa------------CGC-GCGUCCGGuucGUCC- -5'
25921 3' -60.3 NC_005337.1 + 46798 0.66 0.709176
Target:  5'- cUCUCGGUcugggacgccgaggGCGCGCuGGCCAucuccAGCGa- -3'
miRNA:   3'- -GGAGCCGa-------------CGCGCGuCCGGU-----UCGUcc -5'
25921 3' -60.3 NC_005337.1 + 13002 0.66 0.705259
Target:  5'- gUCUCGGU--CGUGCAGGCCu-GCGa- -3'
miRNA:   3'- -GGAGCCGacGCGCGUCCGGuuCGUcc -5'
25921 3' -60.3 NC_005337.1 + 95258 0.66 0.705259
Target:  5'- gCgcgCGGCaGaCGCGCGGGcCCAGGUAu- -3'
miRNA:   3'- gGa--GCCGaC-GCGCGUCC-GGUUCGUcc -5'
25921 3' -60.3 NC_005337.1 + 110338 0.66 0.705259
Target:  5'- gCCgggCGGCgucgcGCGCGCcuGCC--GCGGGc -3'
miRNA:   3'- -GGa--GCCGa----CGCGCGucCGGuuCGUCC- -5'
25921 3' -60.3 NC_005337.1 + 124559 0.66 0.705259
Target:  5'- uCCUCcccGCUGCGCG-AGGCCGcguccaAGCGc- -3'
miRNA:   3'- -GGAGc--CGACGCGCgUCCGGU------UCGUcc -5'
25921 3' -60.3 NC_005337.1 + 43825 0.66 0.705259
Target:  5'- aCCUCcacGCUGCa-GCGGGCCGgcGGCGcGGu -3'
miRNA:   3'- -GGAGc--CGACGcgCGUCCGGU--UCGU-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.