miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 3' -56 NC_005337.1 + 47672 0.67 0.818881
Target:  5'- -cCGGCAUGCugGcGgGCGUCCGcGUGc -3'
miRNA:   3'- uuGCCGUGUGugCaCaCGUAGGC-CAC- -5'
25924 3' -56 NC_005337.1 + 56889 0.67 0.818881
Target:  5'- cGCGGCGCcgGCugGUGuUGCGgcaccgcgggaUCCGGg- -3'
miRNA:   3'- uUGCCGUG--UGugCAC-ACGU-----------AGGCCac -5'
25924 3' -56 NC_005337.1 + 5992 0.67 0.818881
Target:  5'- --aGGCGCGCGCGU-UGCAgaccgCCGcGUGc -3'
miRNA:   3'- uugCCGUGUGUGCAcACGUa----GGC-CAC- -5'
25924 3' -56 NC_005337.1 + 13271 0.67 0.818003
Target:  5'- -uCGGCACACGaagcagacgucCGUGUucgccggacccaaGCAgugCCGGUGg -3'
miRNA:   3'- uuGCCGUGUGU-----------GCACA-------------CGUa--GGCCAC- -5'
25924 3' -56 NC_005337.1 + 73441 0.67 0.810031
Target:  5'- gAGCGaCACGCGCGUGcuCAUCCGcGUGc -3'
miRNA:   3'- -UUGCcGUGUGUGCACacGUAGGC-CAC- -5'
25924 3' -56 NC_005337.1 + 83419 0.67 0.810031
Target:  5'- aGAUGGCGCcCACGa--GCAUCuCGGUGc -3'
miRNA:   3'- -UUGCCGUGuGUGCacaCGUAG-GCCAC- -5'
25924 3' -56 NC_005337.1 + 89294 0.67 0.810031
Target:  5'- gGACGGCgGCGaGCGUGUuggagcGCAgCCGGUGc -3'
miRNA:   3'- -UUGCCG-UGUgUGCACA------CGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 123117 0.67 0.809137
Target:  5'- cACGGCGaGCACGUcGUGCggcgcccGUCgCGGUGc -3'
miRNA:   3'- uUGCCGUgUGUGCA-CACG-------UAG-GCCAC- -5'
25924 3' -56 NC_005337.1 + 9308 0.67 0.801924
Target:  5'- uGGCGGCgaACGCACGgacgacagccgagcUGCGUCCGGa- -3'
miRNA:   3'- -UUGCCG--UGUGUGCac------------ACGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 43073 0.68 0.79184
Target:  5'- cGGCGGCGCGCcCGUccGCAUCgCGGc- -3'
miRNA:   3'- -UUGCCGUGUGuGCAcaCGUAG-GCCac -5'
25924 3' -56 NC_005337.1 + 58728 0.68 0.79184
Target:  5'- gAugGGCGCgccgGCGCGgGUGCA-CCGGa- -3'
miRNA:   3'- -UugCCGUG----UGUGCaCACGUaGGCCac -5'
25924 3' -56 NC_005337.1 + 9018 0.68 0.782516
Target:  5'- --gGGCACGCACGaUGaGCGUCCGu-- -3'
miRNA:   3'- uugCCGUGUGUGC-ACaCGUAGGCcac -5'
25924 3' -56 NC_005337.1 + 42401 0.68 0.782516
Target:  5'- cGCGGCGCGCGgccuCGcUGUGCG-CCGGc- -3'
miRNA:   3'- uUGCCGUGUGU----GC-ACACGUaGGCCac -5'
25924 3' -56 NC_005337.1 + 127779 0.68 0.782516
Target:  5'- uGACGGa--GCGCGUgGUGCGggugCUGGUGg -3'
miRNA:   3'- -UUGCCgugUGUGCA-CACGUa---GGCCAC- -5'
25924 3' -56 NC_005337.1 + 122806 0.68 0.773052
Target:  5'- cGCGGC-CAUcgaccgcaGCGUGcGCGUCCGcGUGa -3'
miRNA:   3'- uUGCCGuGUG--------UGCACaCGUAGGC-CAC- -5'
25924 3' -56 NC_005337.1 + 3384 0.68 0.773052
Target:  5'- cGugGGCgagaaGCGCGCGUGcGCcAUCUGGUa -3'
miRNA:   3'- -UugCCG-----UGUGUGCACaCG-UAGGCCAc -5'
25924 3' -56 NC_005337.1 + 49733 0.68 0.773052
Target:  5'- gAGCGGgACgccggACACG-GUGCG-CCGGUGc -3'
miRNA:   3'- -UUGCCgUG-----UGUGCaCACGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 57956 0.69 0.723972
Target:  5'- cACGGcCACGCcCGUGgucaacaGCGUCCGGg- -3'
miRNA:   3'- uUGCC-GUGUGuGCACa------CGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 127890 0.69 0.703698
Target:  5'- cGCGGCGCcggcgaGCGCGUGcggGCcgagCCGGUGc -3'
miRNA:   3'- uUGCCGUG------UGUGCACa--CGua--GGCCAC- -5'
25924 3' -56 NC_005337.1 + 100097 0.69 0.703698
Target:  5'- cGCGGCGCGcCGCGUGgagcugcGCAUCCccGUGg -3'
miRNA:   3'- uUGCCGUGU-GUGCACa------CGUAGGc-CAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.