miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 5' -58.8 NC_005337.1 + 128308 0.67 0.720628
Target:  5'- -gCGCCGucUGCUCGCGCGCGgcgcgagcGcGACUg -3'
miRNA:   3'- gaGCGGCc-ACGAGUGCGCGUa-------C-CUGA- -5'
25924 5' -58.8 NC_005337.1 + 99202 0.67 0.720628
Target:  5'- -gCGCCGGagacgcGUUCuCGCGCGcGGACUu -3'
miRNA:   3'- gaGCGGCCa-----CGAGuGCGCGUaCCUGA- -5'
25924 5' -58.8 NC_005337.1 + 111383 0.67 0.720628
Target:  5'- gCUCG-CGGUgccGCUCGCGCGgCAcgucGGACa -3'
miRNA:   3'- -GAGCgGCCA---CGAGUGCGC-GUa---CCUGa -5'
25924 5' -58.8 NC_005337.1 + 8143 0.67 0.710765
Target:  5'- -aCGCCGGgcaugGC-CGCGCGCAcGG-Cg -3'
miRNA:   3'- gaGCGGCCa----CGaGUGCGCGUaCCuGa -5'
25924 5' -58.8 NC_005337.1 + 103883 0.67 0.710765
Target:  5'- -gCGCCaGcUGCUggccgCGCGCGaCAUGGACg -3'
miRNA:   3'- gaGCGGcC-ACGA-----GUGCGC-GUACCUGa -5'
25924 5' -58.8 NC_005337.1 + 101240 0.67 0.710765
Target:  5'- -cCGCgCGcGUGCUCGCGCuggacgGCGcGGACg -3'
miRNA:   3'- gaGCG-GC-CACGAGUGCG------CGUaCCUGa -5'
25924 5' -58.8 NC_005337.1 + 133448 0.67 0.700835
Target:  5'- gUCGagcCCGG-GCcCGCGCGCGcGGACg -3'
miRNA:   3'- gAGC---GGCCaCGaGUGCGCGUaCCUGa -5'
25924 5' -58.8 NC_005337.1 + 133448 0.67 0.700835
Target:  5'- gUCGagcCCGG-GCcCGCGCGCGcGGACg -3'
miRNA:   3'- gAGC---GGCCaCGaGUGCGCGUaCCUGa -5'
25924 5' -58.8 NC_005337.1 + 130760 0.67 0.700835
Target:  5'- cCUCGCaGGUGgaCuuCGCGCAgaccUGGGCg -3'
miRNA:   3'- -GAGCGgCCACgaGu-GCGCGU----ACCUGa -5'
25924 5' -58.8 NC_005337.1 + 63148 0.67 0.700835
Target:  5'- gUUGCCGGUGC-CGC-CGCccgaGGACg -3'
miRNA:   3'- gAGCGGCCACGaGUGcGCGua--CCUGa -5'
25924 5' -58.8 NC_005337.1 + 133694 0.67 0.69085
Target:  5'- uUCGCCGGcgGCUUcCGCGCGgccGcGGCg -3'
miRNA:   3'- gAGCGGCCa-CGAGuGCGCGUa--C-CUGa -5'
25924 5' -58.8 NC_005337.1 + 79433 0.67 0.69085
Target:  5'- -aCGCCGG-GCgCGCGUGCAUGuuCUu -3'
miRNA:   3'- gaGCGGCCaCGaGUGCGCGUACcuGA- -5'
25924 5' -58.8 NC_005337.1 + 133694 0.67 0.69085
Target:  5'- uUCGCCGGcgGCUUcCGCGCGgccGcGGCg -3'
miRNA:   3'- gAGCGGCCa-CGAGuGCGCGUa--C-CUGa -5'
25924 5' -58.8 NC_005337.1 + 96553 0.67 0.686841
Target:  5'- uCUCGCagaugccgcugcaGGUGgacgacCUCACGCGCGcGGGCg -3'
miRNA:   3'- -GAGCGg------------CCAC------GAGUGCGCGUaCCUGa -5'
25924 5' -58.8 NC_005337.1 + 28250 0.67 0.680816
Target:  5'- gUCGCgCGGcaccacGCgCACGUGCGUGGugUc -3'
miRNA:   3'- gAGCG-GCCa-----CGaGUGCGCGUACCugA- -5'
25924 5' -58.8 NC_005337.1 + 55186 0.67 0.680816
Target:  5'- -gUGCCGGUGggCAUGCGCGUGu--- -3'
miRNA:   3'- gaGCGGCCACgaGUGCGCGUACcuga -5'
25924 5' -58.8 NC_005337.1 + 75093 0.67 0.680816
Target:  5'- gUCGCCGGUGC-CcCGaCGCAcGGcCUg -3'
miRNA:   3'- gAGCGGCCACGaGuGC-GCGUaCCuGA- -5'
25924 5' -58.8 NC_005337.1 + 126050 0.68 0.664683
Target:  5'- -gCGCCGGUGCggACGCGacccuugccgaccUGGACg -3'
miRNA:   3'- gaGCGGCCACGagUGCGCgu-----------ACCUGa -5'
25924 5' -58.8 NC_005337.1 + 102477 0.68 0.660638
Target:  5'- cCUCGaCCGcGUGCUCAgCGUGgA-GGACg -3'
miRNA:   3'- -GAGC-GGC-CACGAGU-GCGCgUaCCUGa -5'
25924 5' -58.8 NC_005337.1 + 122085 0.68 0.660638
Target:  5'- -gCGCuCGGUGCUCGaccagcucguCGCGCAcggcgcGGACa -3'
miRNA:   3'- gaGCG-GCCACGAGU----------GCGCGUa-----CCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.