miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25927 3' -59 NC_005337.1 + 112862 0.66 0.783701
Target:  5'- uGGCCGCggcccacgucgacgaUGCCGCGGCcGCC----GAGAu -3'
miRNA:   3'- -CCGGCG---------------GUGGCGCCG-CGGgaauUUCU- -5'
25927 3' -59 NC_005337.1 + 26341 0.66 0.780054
Target:  5'- aGCaGCCGCaucaGCGG-GCCCUUGAugcAGGu -3'
miRNA:   3'- cCGgCGGUGg---CGCCgCGGGAAUU---UCU- -5'
25927 3' -59 NC_005337.1 + 14420 0.66 0.780054
Target:  5'- uGCCgcgcgacguGCCGCCGCuGGCGCCgggUAccGAg -3'
miRNA:   3'- cCGG---------CGGUGGCG-CCGCGGga-AUuuCU- -5'
25927 3' -59 NC_005337.1 + 18658 0.66 0.780054
Target:  5'- cGCCGCCGCCGgCGgGCGgaUCC--GAGGGc -3'
miRNA:   3'- cCGGCGGUGGC-GC-CGC--GGGaaUUUCU- -5'
25927 3' -59 NC_005337.1 + 93658 0.66 0.780054
Target:  5'- cGCgGCCgGCCGCGGCGUaCCa------ -3'
miRNA:   3'- cCGgCGG-UGGCGCCGCG-GGaauuucu -5'
25927 3' -59 NC_005337.1 + 81838 0.66 0.780054
Target:  5'- gGGUCGUagaGCCagggccCGGCGUCCgUGAAGAg -3'
miRNA:   3'- -CCGGCGg--UGGc-----GCCGCGGGaAUUUCU- -5'
25927 3' -59 NC_005337.1 + 110549 0.66 0.780054
Target:  5'- uGCCGCU-CCGCGGCGgCggUcAGGAu -3'
miRNA:   3'- cCGGCGGuGGCGCCGCgGgaAuUUCU- -5'
25927 3' -59 NC_005337.1 + 68480 0.66 0.780054
Target:  5'- cGCCGCCgcACCG-GGCGCCg------- -3'
miRNA:   3'- cCGGCGG--UGGCgCCGCGGgaauuucu -5'
25927 3' -59 NC_005337.1 + 87508 0.66 0.780054
Target:  5'- cGGCuCGuCCACgagcaggaaGCGGCuGCCCgucaUGGAGAu -3'
miRNA:   3'- -CCG-GC-GGUGg--------CGCCG-CGGGa---AUUUCU- -5'
25927 3' -59 NC_005337.1 + 123673 0.66 0.780054
Target:  5'- cGCCGCCGcucccCCGCGGCgggaccggGCUCgucgcGGAGAu -3'
miRNA:   3'- cCGGCGGU-----GGCGCCG--------CGGGaa---UUUCU- -5'
25927 3' -59 NC_005337.1 + 26101 0.66 0.780054
Target:  5'- cGCCGCCggauguccACCGCGGCGaucuCCgccuccAGAc -3'
miRNA:   3'- cCGGCGG--------UGGCGCCGCg---GGaauu--UCU- -5'
25927 3' -59 NC_005337.1 + 91724 0.66 0.780054
Target:  5'- aGCCGCaGCCGCaccaGCGCCCg------ -3'
miRNA:   3'- cCGGCGgUGGCGc---CGCGGGaauuucu -5'
25927 3' -59 NC_005337.1 + 70109 0.66 0.780054
Target:  5'- cGG-CGCCAgCGUGGUGgCCU--GGGAa -3'
miRNA:   3'- -CCgGCGGUgGCGCCGCgGGAauUUCU- -5'
25927 3' -59 NC_005337.1 + 117242 0.66 0.780054
Target:  5'- uGCCGCUGCCGUG-CGCCUUc----- -3'
miRNA:   3'- cCGGCGGUGGCGCcGCGGGAauuucu -5'
25927 3' -59 NC_005337.1 + 128226 0.66 0.779139
Target:  5'- uGGCCGCgGgCGCGGacauccaCGCCCg------ -3'
miRNA:   3'- -CCGGCGgUgGCGCC-------GCGGGaauuucu -5'
25927 3' -59 NC_005337.1 + 119252 0.66 0.774545
Target:  5'- uGCCGCUgucgcacaugaacaaACUGCGGCGCCg------- -3'
miRNA:   3'- cCGGCGG---------------UGGCGCCGCGGgaauuucu -5'
25927 3' -59 NC_005337.1 + 115642 0.66 0.774545
Target:  5'- cGGCCGCCAUCGCcgaGGagugugcgaagaaaGCCCUc----- -3'
miRNA:   3'- -CCGGCGGUGGCG---CCg-------------CGGGAauuucu -5'
25927 3' -59 NC_005337.1 + 108759 0.66 0.774545
Target:  5'- gGGCCGCUGCCuggaGCGcgucauaacgaguacGUGCUCUUcGAGAa -3'
miRNA:   3'- -CCGGCGGUGG----CGC---------------CGCGGGAAuUUCU- -5'
25927 3' -59 NC_005337.1 + 80391 0.66 0.770847
Target:  5'- gGGCCGCC-CCGaCG-CGCUgCUUGcAGAa -3'
miRNA:   3'- -CCGGCGGuGGC-GCcGCGG-GAAUuUCU- -5'
25927 3' -59 NC_005337.1 + 86585 0.66 0.770847
Target:  5'- gGGUCGCCgucguaccGCaCGCGGaCGCCCg------ -3'
miRNA:   3'- -CCGGCGG--------UG-GCGCC-GCGGGaauuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.