miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25929 3' -55.7 NC_005337.1 + 3648 0.67 0.863162
Target:  5'- cGCCGCggCCUCGUcgucCGCGCAGucgGGg- -3'
miRNA:   3'- -CGGUGa-GGAGCAa---GUGCGUCca-CCac -5'
25929 3' -55.7 NC_005337.1 + 9983 0.66 0.898556
Target:  5'- gGCCGCgUCCUCGgcCACgGCAGGg---- -3'
miRNA:   3'- -CGGUG-AGGAGCaaGUG-CGUCCaccac -5'
25929 3' -55.7 NC_005337.1 + 15964 0.71 0.668432
Target:  5'- uCCACUCCUCGUcUACGUgaAGGUGcGg- -3'
miRNA:   3'- cGGUGAGGAGCAaGUGCG--UCCAC-Cac -5'
25929 3' -55.7 NC_005337.1 + 25194 0.67 0.860093
Target:  5'- aCCACUCCagCGgcaUCGCGCGGGacucgaacucgaaGGUGa -3'
miRNA:   3'- cGGUGAGGa-GCa--AGUGCGUCCa------------CCAC- -5'
25929 3' -55.7 NC_005337.1 + 25674 0.7 0.699042
Target:  5'- cGCCGCggcCCUCGaaggcggcgUCGCGCAGGagcgGGUu -3'
miRNA:   3'- -CGGUGa--GGAGCa--------AGUGCGUCCa---CCAc -5'
25929 3' -55.7 NC_005337.1 + 29469 0.72 0.596352
Target:  5'- cGUC-CUCCUCGgagUCGCGCAGGaucuccgagacGGUGa -3'
miRNA:   3'- -CGGuGAGGAGCa--AGUGCGUCCa----------CCAC- -5'
25929 3' -55.7 NC_005337.1 + 30553 0.78 0.274956
Target:  5'- gGCCGCUCCgCGUUCAUG-AGGUGGa- -3'
miRNA:   3'- -CGGUGAGGaGCAAGUGCgUCCACCac -5'
25929 3' -55.7 NC_005337.1 + 33699 0.66 0.891932
Target:  5'- cGCCAcCUCCUCGa------AGGUGGUGg -3'
miRNA:   3'- -CGGU-GAGGAGCaagugcgUCCACCAC- -5'
25929 3' -55.7 NC_005337.1 + 34805 0.67 0.863162
Target:  5'- gGCCACgaagacgcCCUCGcgCACGCgcgcguccacgAGGUGGc- -3'
miRNA:   3'- -CGGUGa-------GGAGCaaGUGCG-----------UCCACCac -5'
25929 3' -55.7 NC_005337.1 + 34873 0.68 0.795033
Target:  5'- cGCCGC-CCgCGgugCGCagcaccgGCAGGUGGUGc -3'
miRNA:   3'- -CGGUGaGGaGCaa-GUG-------CGUCCACCAC- -5'
25929 3' -55.7 NC_005337.1 + 47168 0.66 0.904946
Target:  5'- -gCAgUCCUCGgacuUCACGaAGGUGGa- -3'
miRNA:   3'- cgGUgAGGAGCa---AGUGCgUCCACCac -5'
25929 3' -55.7 NC_005337.1 + 51493 0.66 0.904946
Target:  5'- gGCgGCUCCcgUCGUcaaccUCACGCcGGUGuucGUGg -3'
miRNA:   3'- -CGgUGAGG--AGCA-----AGUGCGuCCAC---CAC- -5'
25929 3' -55.7 NC_005337.1 + 53964 0.66 0.884377
Target:  5'- uGCCGCgaCUCGUUCGCG-GGGcucgucaagcaccUGGUGg -3'
miRNA:   3'- -CGGUGagGAGCAAGUGCgUCC-------------ACCAC- -5'
25929 3' -55.7 NC_005337.1 + 56304 0.68 0.804959
Target:  5'- gGCCGCUgCUCGagaUCuCGCAGGagcgcuucgUGGUGc -3'
miRNA:   3'- -CGGUGAgGAGCa--AGuGCGUCC---------ACCAC- -5'
25929 3' -55.7 NC_005337.1 + 57686 0.67 0.863162
Target:  5'- aGCCGUggaCCUCcaccaugaugcaGUUCGCGCcggAGGUGGUGc -3'
miRNA:   3'- -CGGUGa--GGAG------------CAAGUGCG---UCCACCAC- -5'
25929 3' -55.7 NC_005337.1 + 79367 0.66 0.898556
Target:  5'- -gCACgUCCgUGaUCACGgAGGUGGUGu -3'
miRNA:   3'- cgGUG-AGGaGCaAGUGCgUCCACCAC- -5'
25929 3' -55.7 NC_005337.1 + 81482 0.68 0.821644
Target:  5'- cGCCgugguggGCUCCgUGUUCACGCGGuUGGa- -3'
miRNA:   3'- -CGG-------UGAGGaGCAAGUGCGUCcACCac -5'
25929 3' -55.7 NC_005337.1 + 82121 0.66 0.877992
Target:  5'- aCCGCUCCuucUCGUaCACGUAGGaguUGGc- -3'
miRNA:   3'- cGGUGAGG---AGCAaGUGCGUCC---ACCac -5'
25929 3' -55.7 NC_005337.1 + 82914 0.78 0.284228
Target:  5'- aGCUGCUCCagcuccuucaucugcUUGUUCACGCGGG-GGUGg -3'
miRNA:   3'- -CGGUGAGG---------------AGCAAGUGCGUCCaCCAC- -5'
25929 3' -55.7 NC_005337.1 + 83969 0.75 0.412903
Target:  5'- cGUCACgg--CGUUCACGCcGGUGGUGg -3'
miRNA:   3'- -CGGUGaggaGCAAGUGCGuCCACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.