miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25929 5' -61.9 NC_005337.1 + 112471 0.66 0.60575
Target:  5'- cGCACCcgacgAUGUUcggCUGCGUGAgaucGCGCUGGa -3'
miRNA:   3'- uCGUGG-----UGCGG---GACGCACU----CGCGGCC- -5'
25929 5' -61.9 NC_005337.1 + 38598 0.66 0.64535
Target:  5'- uGGCGCgaGCGCa--GCGUGGGCguGCUGGg -3'
miRNA:   3'- -UCGUGg-UGCGggaCGCACUCG--CGGCC- -5'
25929 5' -61.9 NC_005337.1 + 75138 0.66 0.64535
Target:  5'- gAGUACCacACGCUCUGCccGUcGGUgaGCCGGa -3'
miRNA:   3'- -UCGUGG--UGCGGGACG--CAcUCG--CGGCC- -5'
25929 5' -61.9 NC_005337.1 + 100224 0.66 0.615639
Target:  5'- cGGCGCCGCGUgC-GCGUGAuCGCgGu -3'
miRNA:   3'- -UCGUGGUGCGgGaCGCACUcGCGgCc -5'
25929 5' -61.9 NC_005337.1 + 71648 0.66 0.60575
Target:  5'- cAGCGCCugGCCgCgcacuucaacGCGcGGGUGCaCGGc -3'
miRNA:   3'- -UCGUGGugCGG-Ga---------CGCaCUCGCG-GCC- -5'
25929 5' -61.9 NC_005337.1 + 3595 0.66 0.64535
Target:  5'- gAGCAgCGCcCCCagcgGCGU-AGCGCCGu -3'
miRNA:   3'- -UCGUgGUGcGGGa---CGCAcUCGCGGCc -5'
25929 5' -61.9 NC_005337.1 + 129885 0.66 0.615639
Target:  5'- cGGCAUCuCGCCgCUGCacauGGCGgCCGGg -3'
miRNA:   3'- -UCGUGGuGCGG-GACGcac-UCGC-GGCC- -5'
25929 5' -61.9 NC_005337.1 + 2905 0.66 0.615639
Target:  5'- uGCagACCACGUCCaggagcgGCGUcgccgGAGUGCCGa -3'
miRNA:   3'- uCG--UGGUGCGGGa------CGCA-----CUCGCGGCc -5'
25929 5' -61.9 NC_005337.1 + 49702 0.66 0.635447
Target:  5'- -aCACCAgCGCCCcggGCucgGcGCGCCGGu -3'
miRNA:   3'- ucGUGGU-GCGGGa--CGca-CuCGCGGCC- -5'
25929 5' -61.9 NC_005337.1 + 91195 0.66 0.595878
Target:  5'- gGGCGCCGCGa--UGCGgacgGGcGCGCCGc -3'
miRNA:   3'- -UCGUGGUGCgggACGCa---CU-CGCGGCc -5'
25929 5' -61.9 NC_005337.1 + 41747 0.66 0.595878
Target:  5'- cGCACCGCGUCCaugggGCGgccGCGCaGGc -3'
miRNA:   3'- uCGUGGUGCGGGa----CGCacuCGCGgCC- -5'
25929 5' -61.9 NC_005337.1 + 6347 0.66 0.60575
Target:  5'- cGCACCGCGUCC-GCGUacuugcccAGCaCCGGc -3'
miRNA:   3'- uCGUGGUGCGGGaCGCAc-------UCGcGGCC- -5'
25929 5' -61.9 NC_005337.1 + 747 0.66 0.649309
Target:  5'- gAGCGCgGCGCCCgcgGCcucgacggcggccauGUGcugcGCGCCGc -3'
miRNA:   3'- -UCGUGgUGCGGGa--CG---------------CACu---CGCGGCc -5'
25929 5' -61.9 NC_005337.1 + 68206 0.66 0.60575
Target:  5'- gGGCGCCGCugcggGCCCgccugacgGCGUccggguuccgGAGCgcgGCCGGc -3'
miRNA:   3'- -UCGUGGUG-----CGGGa-------CGCA----------CUCG---CGGCC- -5'
25929 5' -61.9 NC_005337.1 + 1952 0.66 0.615639
Target:  5'- cGCAugUCGCuGCCC-GCGUcagcGAGCaGCCGGa -3'
miRNA:   3'- uCGU--GGUG-CGGGaCGCA----CUCG-CGGCC- -5'
25929 5' -61.9 NC_005337.1 + 83121 0.66 0.604762
Target:  5'- cGCGCguCGCUCUGCGUGgacuugaGGUaGUCGGc -3'
miRNA:   3'- uCGUGguGCGGGACGCAC-------UCG-CGGCC- -5'
25929 5' -61.9 NC_005337.1 + 747 0.66 0.649309
Target:  5'- gAGCGCgGCGCCCgcgGCcucgacggcggccauGUGcugcGCGCCGc -3'
miRNA:   3'- -UCGUGgUGCGGGa--CG---------------CACu---CGCGGCc -5'
25929 5' -61.9 NC_005337.1 + 76388 0.66 0.62554
Target:  5'- uAGUugUACaCCgUGCGcgcgGGGCGCUGGc -3'
miRNA:   3'- -UCGugGUGcGGgACGCa---CUCGCGGCC- -5'
25929 5' -61.9 NC_005337.1 + 29109 0.66 0.635447
Target:  5'- gGGUcgACCACGCCgUGC---AGCGCCa- -3'
miRNA:   3'- -UCG--UGGUGCGGgACGcacUCGCGGcc -5'
25929 5' -61.9 NC_005337.1 + 34860 0.66 0.64535
Target:  5'- cGGCGgCGCGCCauccuccGaCGUGAacucuacgagcGCGCCGGu -3'
miRNA:   3'- -UCGUgGUGCGGga-----C-GCACU-----------CGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.