miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25930 3' -60.9 NC_005337.1 + 36531 0.66 0.727758
Target:  5'- aCGcCGCGgGCgUCcCCGGcggcugGGCGGCGc -3'
miRNA:   3'- -GCuGCGCgCGgAGcGGCCa-----UUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 131143 0.66 0.727758
Target:  5'- uCGAcCGCGCGCUggacgcgagGCCGGccGCGGUc -3'
miRNA:   3'- -GCU-GCGCGCGGag-------CGGCCauUGCCGc -5'
25930 3' -60.9 NC_005337.1 + 129519 0.66 0.727758
Target:  5'- uCGACGCGCuGCUcgCGCgCGGc-GCGaGCGu -3'
miRNA:   3'- -GCUGCGCG-CGGa-GCG-GCCauUGC-CGC- -5'
25930 3' -60.9 NC_005337.1 + 26087 0.66 0.727758
Target:  5'- gCGGCGCggggaaGCGCC--GCCGGaUGuccaccGCGGCGa -3'
miRNA:   3'- -GCUGCG------CGCGGagCGGCC-AU------UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 46461 0.66 0.727758
Target:  5'- gGACGCGUGCgaCUuccUGgUGGUGugGGUGg -3'
miRNA:   3'- gCUGCGCGCG--GA---GCgGCCAUugCCGC- -5'
25930 3' -60.9 NC_005337.1 + 117095 0.66 0.727758
Target:  5'- --cCGCGCGCCcUGCUGGcgcuguCGGUGa -3'
miRNA:   3'- gcuGCGCGCGGaGCGGCCauu---GCCGC- -5'
25930 3' -60.9 NC_005337.1 + 95311 0.66 0.727758
Target:  5'- gCGGCGCgcuguuGCGCUcgUCGUCGGUuAGCGcGCc -3'
miRNA:   3'- -GCUGCG------CGCGG--AGCGGCCA-UUGC-CGc -5'
25930 3' -60.9 NC_005337.1 + 109717 0.66 0.727758
Target:  5'- gCGAUG-GCGCCggaaCGCCGaGcAGuCGGCGg -3'
miRNA:   3'- -GCUGCgCGCGGa---GCGGC-CaUU-GCCGC- -5'
25930 3' -60.9 NC_005337.1 + 77913 0.66 0.727758
Target:  5'- -aGCGCGUGCaCUaCGUCGGUgccgaagagcGugGGCa -3'
miRNA:   3'- gcUGCGCGCG-GA-GCGGCCA----------UugCCGc -5'
25930 3' -60.9 NC_005337.1 + 92678 0.66 0.718235
Target:  5'- uCGACGUGCucaCCUUcCUGGgcgGCGGCGa -3'
miRNA:   3'- -GCUGCGCGc--GGAGcGGCCau-UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 45510 0.66 0.718235
Target:  5'- gGACcUGCGCCUC-CgGGUccuCGGCGu -3'
miRNA:   3'- gCUGcGCGCGGAGcGgCCAuu-GCCGC- -5'
25930 3' -60.9 NC_005337.1 + 5807 0.66 0.718235
Target:  5'- aGcACGCG-GUCUcccgCGCCGGUccGGCGGUGu -3'
miRNA:   3'- gC-UGCGCgCGGA----GCGGCCA--UUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 74541 0.66 0.718235
Target:  5'- aGACGCGC-UC-CGCCGc--GCGGCGc -3'
miRNA:   3'- gCUGCGCGcGGaGCGGCcauUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 124975 0.66 0.718235
Target:  5'- ----aUGUuCCUCGCCGGUuGCGGCa -3'
miRNA:   3'- gcugcGCGcGGAGCGGCCAuUGCCGc -5'
25930 3' -60.9 NC_005337.1 + 103997 0.66 0.718235
Target:  5'- gCGugGUGCGCCUgaaCGCCuuccuGG-AGCagGGCGa -3'
miRNA:   3'- -GCugCGCGCGGA---GCGG-----CCaUUG--CCGC- -5'
25930 3' -60.9 NC_005337.1 + 46013 0.66 0.718235
Target:  5'- --cCGCgGCGCC-CGCCGGcgcgcCGGCa -3'
miRNA:   3'- gcuGCG-CGCGGaGCGGCCauu--GCCGc -5'
25930 3' -60.9 NC_005337.1 + 13900 0.66 0.718235
Target:  5'- uGACGgggaccaGCGUCaUCGUCGGgucGugGGCGg -3'
miRNA:   3'- gCUGCg------CGCGG-AGCGGCCa--UugCCGC- -5'
25930 3' -60.9 NC_005337.1 + 34614 0.66 0.718235
Target:  5'- aCGG-GCGCGCC-CaGCCGc--GCGGCGa -3'
miRNA:   3'- -GCUgCGCGCGGaG-CGGCcauUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 31508 0.66 0.718235
Target:  5'- uCGACGCGCucgaCCUC-CgGGUgGAUGGUGg -3'
miRNA:   3'- -GCUGCGCGc---GGAGcGgCCA-UUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 50905 0.66 0.708643
Target:  5'- -cGCGCGCGCCcagCgGCCGGUccgcagccAGuCGGCc -3'
miRNA:   3'- gcUGCGCGCGGa--G-CGGCCA--------UU-GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.