miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25930 3' -60.9 NC_005337.1 + 50905 0.66 0.708643
Target:  5'- -cGCGCGCGCCcagCgGCCGGUccgcagccAGuCGGCc -3'
miRNA:   3'- gcUGCGCGCGGa--G-CGGCCA--------UU-GCCGc -5'
25930 3' -60.9 NC_005337.1 + 41799 0.66 0.708643
Target:  5'- aGuuGCGCGCCgucgaggcguUCGCCaGGaacCGGCGg -3'
miRNA:   3'- gCugCGCGCGG----------AGCGG-CCauuGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 130781 0.66 0.708643
Target:  5'- aGACcuGgGCGCC--GCCGGU-GCGGCu -3'
miRNA:   3'- gCUG--CgCGCGGagCGGCCAuUGCCGc -5'
25930 3' -60.9 NC_005337.1 + 46669 0.66 0.707681
Target:  5'- gCGAuCGCGCagcagucGCCcgagcggCGCCGGgagguCGGCGa -3'
miRNA:   3'- -GCU-GCGCG-------CGGa------GCGGCCauu--GCCGC- -5'
25930 3' -60.9 NC_005337.1 + 99461 0.66 0.707681
Target:  5'- gGACGCGCGCgUgCGCgagggcgucuucgUGGccguGCGGCGc -3'
miRNA:   3'- gCUGCGCGCGgA-GCG-------------GCCau--UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 74587 0.66 0.705754
Target:  5'- gGACGCgcugucgcgcaucgGCGCCUC-CCGG-AGCcGCGa -3'
miRNA:   3'- gCUGCG--------------CGCGGAGcGGCCaUUGcCGC- -5'
25930 3' -60.9 NC_005337.1 + 97164 0.66 0.702859
Target:  5'- aCGACG-GCGCCUCGgCGcugcugcgcucCGGCGa -3'
miRNA:   3'- -GCUGCgCGCGGAGCgGCcauu-------GCCGC- -5'
25930 3' -60.9 NC_005337.1 + 98197 0.66 0.698992
Target:  5'- gGAgGCGCGUCaCGUCGGacACGGUc -3'
miRNA:   3'- gCUgCGCGCGGaGCGGCCauUGCCGc -5'
25930 3' -60.9 NC_005337.1 + 34532 0.66 0.698992
Target:  5'- -cGCGCcCGCCUCGC--GUAGcCGGCGg -3'
miRNA:   3'- gcUGCGcGCGGAGCGgcCAUU-GCCGC- -5'
25930 3' -60.9 NC_005337.1 + 98586 0.66 0.698992
Target:  5'- -cGCGCuCGCCa-GCCGGUcgaaGGCGGCc -3'
miRNA:   3'- gcUGCGcGCGGagCGGCCA----UUGCCGc -5'
25930 3' -60.9 NC_005337.1 + 80619 0.66 0.698992
Target:  5'- cCGACGCGCuGCaUCGCgGcGaucACGGCGc -3'
miRNA:   3'- -GCUGCGCG-CGgAGCGgC-Cau-UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 23914 0.66 0.698992
Target:  5'- uGcCGCGCGCC-CGCgCGcccGCGGCa -3'
miRNA:   3'- gCuGCGCGCGGaGCG-GCcauUGCCGc -5'
25930 3' -60.9 NC_005337.1 + 81789 0.66 0.689288
Target:  5'- uGGCGCGCaugagccgGCuCUCGCgGGcgccGCGGCu -3'
miRNA:   3'- gCUGCGCG--------CG-GAGCGgCCau--UGCCGc -5'
25930 3' -60.9 NC_005337.1 + 63522 0.66 0.689288
Target:  5'- cCGACGUGCagGCCUCG--GGcguGCGGCGc -3'
miRNA:   3'- -GCUGCGCG--CGGAGCggCCau-UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 38258 0.66 0.689288
Target:  5'- gCGGCGCGCGUUcgCGCUc---GCGGCGu -3'
miRNA:   3'- -GCUGCGCGCGGa-GCGGccauUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 51246 0.66 0.689288
Target:  5'- uGACG-GUGUC-CGCCGuGU-ACGGCGu -3'
miRNA:   3'- gCUGCgCGCGGaGCGGC-CAuUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 91309 0.66 0.689288
Target:  5'- gGACGC-CGCCagGCUGGccACGGUc -3'
miRNA:   3'- gCUGCGcGCGGagCGGCCauUGCCGc -5'
25930 3' -60.9 NC_005337.1 + 92541 0.66 0.689288
Target:  5'- gGACGCGgugcgcgagcuCGCCUC-CUGGUucuucgagGACGGCc -3'
miRNA:   3'- gCUGCGC-----------GCGGAGcGGCCA--------UUGCCGc -5'
25930 3' -60.9 NC_005337.1 + 80222 0.66 0.689288
Target:  5'- -aGCGCGCGCacgCgGUCGGgguCGGCGu -3'
miRNA:   3'- gcUGCGCGCGga-G-CGGCCauuGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 64809 0.66 0.688315
Target:  5'- gGACGU-CGCCUC-CCGGUAccugcccaugugcGCGcGCGa -3'
miRNA:   3'- gCUGCGcGCGGAGcGGCCAU-------------UGC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.