miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25930 3' -60.9 NC_005337.1 + 120371 0.73 0.322832
Target:  5'- gGACccgGCGCGCCU-GCCGGcucguGCGGCa -3'
miRNA:   3'- gCUG---CGCGCGGAgCGGCCau---UGCCGc -5'
25930 3' -60.9 NC_005337.1 + 99232 0.75 0.240591
Target:  5'- uCGACGCGguccaccaCGCgCUCGCCGcgGACGGCGa -3'
miRNA:   3'- -GCUGCGC--------GCG-GAGCGGCcaUUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 132035 0.75 0.240591
Target:  5'- aCGACGCGUuCCUCGCgCGGUuccuGCGcGCGc -3'
miRNA:   3'- -GCUGCGCGcGGAGCG-GCCAu---UGC-CGC- -5'
25930 3' -60.9 NC_005337.1 + 39944 0.74 0.268116
Target:  5'- gCGGCGgGCGCCUCGCgCGGgcgcucgAcgcauucgagcgcgACGGCGu -3'
miRNA:   3'- -GCUGCgCGCGGAGCG-GCCa------U--------------UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 48323 0.74 0.276165
Target:  5'- gGGCGCGCugacgggcaugaGCCgggCGCCGGUGaaccaggccGCGGUGg -3'
miRNA:   3'- gCUGCGCG------------CGGa--GCGGCCAU---------UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 78986 0.74 0.276165
Target:  5'- gCGugGCGCgGCUguaggCcCCGGUGAUGGCGg -3'
miRNA:   3'- -GCugCGCG-CGGa----GcGGCCAUUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 99383 0.74 0.28185
Target:  5'- gGACGCGCGgcaccaCCU-GCCGGUGcugcgcaccgcggGCGGCGg -3'
miRNA:   3'- gCUGCGCGC------GGAgCGGCCAU-------------UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 3245 0.73 0.302141
Target:  5'- aGGCGCGCGCa-CGCCuugucguugcGGUGcGCGGCGg -3'
miRNA:   3'- gCUGCGCGCGgaGCGG----------CCAU-UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 38486 0.73 0.322832
Target:  5'- gGGCGCGCGCgUCGCCG--AGCuGGCc -3'
miRNA:   3'- gCUGCGCGCGgAGCGGCcaUUG-CCGc -5'
25930 3' -60.9 NC_005337.1 + 94797 0.75 0.229612
Target:  5'- -cGCGCGCGCgUCGCCGGcacggaGGCGu -3'
miRNA:   3'- gcUGCGCGCGgAGCGGCCauug--CCGC- -5'
25930 3' -60.9 NC_005337.1 + 122544 0.75 0.229612
Target:  5'- gCGACGCGCGCUgcaGCCGGUgcugcuccagccGAgGGUGa -3'
miRNA:   3'- -GCUGCGCGCGGag-CGGCCA------------UUgCCGC- -5'
25930 3' -60.9 NC_005337.1 + 42402 0.76 0.208426
Target:  5'- gCGGCGCGCgGCCUcgcugugCGCCGGcuuCGGCGu -3'
miRNA:   3'- -GCUGCGCG-CGGA-------GCGGCCauuGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 50399 0.8 0.115942
Target:  5'- gGGgGCGCGCCgcgCGUCGGUGacggaGCGGCGg -3'
miRNA:   3'- gCUgCGCGCGGa--GCGGCCAU-----UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 23054 0.78 0.148776
Target:  5'- uGACGCaCGCCgcgCGCCGGaacGCGGCGg -3'
miRNA:   3'- gCUGCGcGCGGa--GCGGCCau-UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 68335 0.78 0.16017
Target:  5'- -cGCGCGUGCCcgUGCCGGagGACGGCGc -3'
miRNA:   3'- gcUGCGCGCGGa-GCGGCCa-UUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 2095 0.78 0.163739
Target:  5'- uCGGCGCGCGCCgcgaGcCCGGUcaggcacgcgugcAGCGGCGu -3'
miRNA:   3'- -GCUGCGCGCGGag--C-GGCCA-------------UUGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 69237 0.77 0.168198
Target:  5'- -cGCGCGCGCCUggacgUGCCGGUGACgcuGGUGg -3'
miRNA:   3'- gcUGCGCGCGGA-----GCGGCCAUUG---CCGC- -5'
25930 3' -60.9 NC_005337.1 + 100752 0.77 0.168198
Target:  5'- aCGACGCGUGCa--GCCGGcgcACGGCGg -3'
miRNA:   3'- -GCUGCGCGCGgagCGGCCau-UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 29717 0.77 0.185341
Target:  5'- gCGAgGCGCGCaCgcgCGCgCGGUGuuGCGGCGg -3'
miRNA:   3'- -GCUgCGCGCG-Ga--GCG-GCCAU--UGCCGC- -5'
25930 3' -60.9 NC_005337.1 + 124936 0.76 0.203522
Target:  5'- gCGACGCGUcaucgcaugucccGCgUCGCCGGUcuCGGCa -3'
miRNA:   3'- -GCUGCGCG-------------CGgAGCGGCCAuuGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.