miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25930 5' -54.4 NC_005337.1 + 95420 0.66 0.948966
Target:  5'- gCGCGUCCAUgUGCUugGCGcacAGGccGGCGUa -3'
miRNA:   3'- -GCGCAGGUA-AUGA--CGC---UCCcuCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 66080 0.66 0.948966
Target:  5'- aCGCGgCC---GCgGCGGcGGAGGCGCu -3'
miRNA:   3'- -GCGCaGGuaaUGaCGCUcCCUCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 9338 0.66 0.944578
Target:  5'- uGCGUCCGgagggACUGCugucGGGGuccAGGgGCa -3'
miRNA:   3'- gCGCAGGUaa---UGACGc---UCCC---UCUgCG- -5'
25930 5' -54.4 NC_005337.1 + 129160 0.66 0.944578
Target:  5'- uGCGUUacuUUGaUGCGuuguGGGGGAUGCu -3'
miRNA:   3'- gCGCAGgu-AAUgACGCu---CCCUCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 11923 0.66 0.93995
Target:  5'- gGCGUCCGaUGCggcacccggGCGcgcgccgucgAGGGAcGCGCa -3'
miRNA:   3'- gCGCAGGUaAUGa--------CGC----------UCCCUcUGCG- -5'
25930 5' -54.4 NC_005337.1 + 36430 0.66 0.93995
Target:  5'- gCGCGccucacCCGgcugcaGCUGCGcGGGcGGACGCa -3'
miRNA:   3'- -GCGCa-----GGUaa----UGACGCuCCC-UCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 107996 0.66 0.929968
Target:  5'- --aGUCCAagUACUucuaCGAGGGcGGGCGCg -3'
miRNA:   3'- gcgCAGGUa-AUGAc---GCUCCC-UCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 5905 0.66 0.929968
Target:  5'- uCGUGUCgCGagAUcGCGAgcgcgagcgGGGAGACGCc -3'
miRNA:   3'- -GCGCAG-GUaaUGaCGCU---------CCCUCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 25970 0.66 0.929968
Target:  5'- gCGCGUCCAggaaGgaGCGcagcagcauGGGGAuGAUGCc -3'
miRNA:   3'- -GCGCAGGUaa--UgaCGC---------UCCCU-CUGCG- -5'
25930 5' -54.4 NC_005337.1 + 124200 0.67 0.926783
Target:  5'- uCGCGcccggcacccuguucUCCGagUACUGCGAguucuGGGGcGGCGCc -3'
miRNA:   3'- -GCGC---------------AGGUa-AUGACGCU-----CCCU-CUGCG- -5'
25930 5' -54.4 NC_005337.1 + 105731 0.67 0.92461
Target:  5'- gCGCGUCCGgauccucUACUcCGAGGacGAGuGCGCc -3'
miRNA:   3'- -GCGCAGGUa------AUGAcGCUCC--CUC-UGCG- -5'
25930 5' -54.4 NC_005337.1 + 77147 0.67 0.924061
Target:  5'- gGCGUCCAggcugGCgGCGAccacGGGGuacugccGGCGCc -3'
miRNA:   3'- gCGCAGGUaa---UGaCGCU----CCCU-------CUGCG- -5'
25930 5' -54.4 NC_005337.1 + 66189 0.67 0.919009
Target:  5'- cCGCGUCCGgg---GCGAcgGGGAGcuCGUg -3'
miRNA:   3'- -GCGCAGGUaaugaCGCU--CCCUCu-GCG- -5'
25930 5' -54.4 NC_005337.1 + 53892 0.67 0.919009
Target:  5'- gGCGUCgGggcggccccGCUgGCGGuGGAGACGCu -3'
miRNA:   3'- gCGCAGgUaa-------UGA-CGCUcCCUCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 89172 0.67 0.919009
Target:  5'- cCGCGUCgucUGCUuaGGGGGugccGGGCGCu -3'
miRNA:   3'- -GCGCAGguaAUGAcgCUCCC----UCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 10717 0.67 0.913164
Target:  5'- cCGCGUCCAcgGCcaUGUGgucAGGGcggugGGACGUg -3'
miRNA:   3'- -GCGCAGGUaaUG--ACGC---UCCC-----UCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 117291 0.67 0.913164
Target:  5'- gGgGUCCcgcgUGCUG-GAGGuGGACGCc -3'
miRNA:   3'- gCgCAGGua--AUGACgCUCCcUCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 46580 0.67 0.913164
Target:  5'- uGCGUCCcc--CcGCGcGGGAGGcCGCg -3'
miRNA:   3'- gCGCAGGuaauGaCGCuCCCUCU-GCG- -5'
25930 5' -54.4 NC_005337.1 + 60521 0.67 0.90075
Target:  5'- aCGCGaacUCCAgguccACgcgGCuGAGGGAGuCGCu -3'
miRNA:   3'- -GCGC---AGGUaa---UGa--CG-CUCCCUCuGCG- -5'
25930 5' -54.4 NC_005337.1 + 48927 0.67 0.90075
Target:  5'- cCGCGUCCGgcaACUGCGGcgugaaggcGGuGAugGACGUg -3'
miRNA:   3'- -GCGCAGGUaa-UGACGCU---------CC-CU--CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.