miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25930 5' -54.4 NC_005337.1 + 1821 0.68 0.887388
Target:  5'- gCGUGUUCccgaacacGUUGgUgGCGAGGGGGuCGCa -3'
miRNA:   3'- -GCGCAGG--------UAAUgA-CGCUCCCUCuGCG- -5'
25930 5' -54.4 NC_005337.1 + 2687 0.77 0.39719
Target:  5'- gGaCGUCCGgaGCUGCGGcGuGGGGACGCg -3'
miRNA:   3'- gC-GCAGGUaaUGACGCU-C-CCUCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 4102 0.7 0.761261
Target:  5'- aGCGUCCucaccGC-GCGcGcGGAGACGCg -3'
miRNA:   3'- gCGCAGGuaa--UGaCGCuC-CCUCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 5905 0.66 0.929968
Target:  5'- uCGUGUCgCGagAUcGCGAgcgcgagcgGGGAGACGCc -3'
miRNA:   3'- -GCGCAG-GUaaUGaCGCU---------CCCUCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 7461 0.69 0.816509
Target:  5'- gGCGUCCGUgGC-GaCGAGGGc-GCGCa -3'
miRNA:   3'- gCGCAGGUAaUGaC-GCUCCCucUGCG- -5'
25930 5' -54.4 NC_005337.1 + 9338 0.66 0.944578
Target:  5'- uGCGUCCGgagggACUGCugucGGGGuccAGGgGCa -3'
miRNA:   3'- gCGCAGGUaa---UGACGc---UCCC---UCUgCG- -5'
25930 5' -54.4 NC_005337.1 + 10717 0.67 0.913164
Target:  5'- cCGCGUCCAcgGCcaUGUGgucAGGGcggugGGACGUg -3'
miRNA:   3'- -GCGCAGGUaaUG--ACGC---UCCC-----UCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 11923 0.66 0.93995
Target:  5'- gGCGUCCGaUGCggcacccggGCGcgcgccgucgAGGGAcGCGCa -3'
miRNA:   3'- gCGCAGGUaAUGa--------CGC----------UCCCUcUGCG- -5'
25930 5' -54.4 NC_005337.1 + 13947 0.69 0.849243
Target:  5'- uCGUGcUCCAUggGCgaggGCggggaagGAGGGGGAUGCg -3'
miRNA:   3'- -GCGC-AGGUAa-UGa---CG-------CUCCCUCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 18406 0.71 0.75159
Target:  5'- -uCGUCUGUUGCU-CGAGGGAGG-GCg -3'
miRNA:   3'- gcGCAGGUAAUGAcGCUCCCUCUgCG- -5'
25930 5' -54.4 NC_005337.1 + 24192 0.7 0.780244
Target:  5'- uCGCG-CCGUUACcgGCGAGGc--GCGCg -3'
miRNA:   3'- -GCGCaGGUAAUGa-CGCUCCcucUGCG- -5'
25930 5' -54.4 NC_005337.1 + 25970 0.66 0.929968
Target:  5'- gCGCGUCCAggaaGgaGCGcagcagcauGGGGAuGAUGCc -3'
miRNA:   3'- -GCGCAGGUaa--UgaCGC---------UCCCU-CUGCG- -5'
25930 5' -54.4 NC_005337.1 + 28504 0.7 0.798684
Target:  5'- gCGCGgucgCgCGgcACUGCGuGGGGcAGGCGCa -3'
miRNA:   3'- -GCGCa---G-GUaaUGACGC-UCCC-UCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 35844 0.76 0.469437
Target:  5'- cCGacaaGUUCGUgcGCUGCGGGGGcGGACGCg -3'
miRNA:   3'- -GCg---CAGGUAa-UGACGCUCCC-UCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 36430 0.66 0.93995
Target:  5'- gCGCGccucacCCGgcugcaGCUGCGcGGGcGGACGCa -3'
miRNA:   3'- -GCGCa-----GGUaa----UGACGCuCCC-UCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 43977 0.71 0.72197
Target:  5'- gCGCGcCCG--GCgGCGAGGaggccGAGACGCu -3'
miRNA:   3'- -GCGCaGGUaaUGaCGCUCC-----CUCUGCG- -5'
25930 5' -54.4 NC_005337.1 + 45888 0.68 0.894186
Target:  5'- -uCGUCC-UUGCUGCGGugcGGGAcAUGCg -3'
miRNA:   3'- gcGCAGGuAAUGACGCU---CCCUcUGCG- -5'
25930 5' -54.4 NC_005337.1 + 46580 0.67 0.913164
Target:  5'- uGCGUCCcc--CcGCGcGGGAGGcCGCg -3'
miRNA:   3'- gCGCAGGuaauGaCGCuCCCUCU-GCG- -5'
25930 5' -54.4 NC_005337.1 + 46819 0.7 0.780244
Target:  5'- gCGuCGUCUAcgACgGCGAGGuGAGcCGCg -3'
miRNA:   3'- -GC-GCAGGUaaUGaCGCUCC-CUCuGCG- -5'
25930 5' -54.4 NC_005337.1 + 47986 0.68 0.873105
Target:  5'- aCGCGUCCAggccgcACUGCGuGGccuGGAucCGCg -3'
miRNA:   3'- -GCGCAGGUaa----UGACGCuCCc--UCU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.