miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25931 3' -55.5 NC_005337.1 + 44584 0.66 0.910197
Target:  5'- cGAUCGGCG-UCUCCgccaaggGCgugUUCCGGCg -3'
miRNA:   3'- aCUAGUUGUgAGAGGa------CG---AGGGCCGg -5'
25931 3' -55.5 NC_005337.1 + 13483 0.66 0.910197
Target:  5'- -cGUCucGCGCcgCUCCagcUGCaUCCCGGUCa -3'
miRNA:   3'- acUAGu-UGUGa-GAGG---ACG-AGGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 92821 0.66 0.910197
Target:  5'- aGAUCAGCGCUC-CCgcgguggagcUGCUCaacgcgacguUCGGCa -3'
miRNA:   3'- aCUAGUUGUGAGaGG----------ACGAG----------GGCCGg -5'
25931 3' -55.5 NC_005337.1 + 46703 0.66 0.910197
Target:  5'- aGGUCGGCgACUUcgacaUCCUGCUCUCGa-- -3'
miRNA:   3'- aCUAGUUG-UGAG-----AGGACGAGGGCcgg -5'
25931 3' -55.5 NC_005337.1 + 58574 0.66 0.910197
Target:  5'- cGG-CGAUGCUCUCCgGCgcggaguaCuuGGCCg -3'
miRNA:   3'- aCUaGUUGUGAGAGGaCGa-------GggCCGG- -5'
25931 3' -55.5 NC_005337.1 + 68551 0.66 0.910197
Target:  5'- aUGAaCAGCGCUUUCgCcaugGCgcggagCUCGGCCa -3'
miRNA:   3'- -ACUaGUUGUGAGAG-Ga---CGa-----GGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 123567 0.66 0.903978
Target:  5'- cGGUCGGaggACgagC-CCgaGCUCCUGGCCg -3'
miRNA:   3'- aCUAGUUg--UGa--GaGGa-CGAGGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 32534 0.66 0.903978
Target:  5'- gGAccUCGugGCUCa---GCUCCCGGCa -3'
miRNA:   3'- aCU--AGUugUGAGaggaCGAGGGCCGg -5'
25931 3' -55.5 NC_005337.1 + 128119 0.66 0.89752
Target:  5'- aGGUCuGCAUgaugCgCCUGCgcaugucCCUGGCCg -3'
miRNA:   3'- aCUAGuUGUGa---GaGGACGa------GGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 66022 0.66 0.890824
Target:  5'- --cUCGACGCUCgCCcacGCg-CCGGCCg -3'
miRNA:   3'- acuAGUUGUGAGaGGa--CGagGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 115831 0.66 0.890824
Target:  5'- ---cCAACGCUCUCCaGuCUCCCccgcguucGCCg -3'
miRNA:   3'- acuaGUUGUGAGAGGaC-GAGGGc-------CGG- -5'
25931 3' -55.5 NC_005337.1 + 48718 0.66 0.886695
Target:  5'- cGAUCAugAagaUCCUGCagggccacuacagcuUCCUGGUCa -3'
miRNA:   3'- aCUAGUugUgagAGGACG---------------AGGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 38321 0.66 0.883895
Target:  5'- gUGAUCGACACg--CCgGCgCCgGGCg -3'
miRNA:   3'- -ACUAGUUGUGagaGGaCGaGGgCCGg -5'
25931 3' -55.5 NC_005337.1 + 100293 0.67 0.876738
Target:  5'- cGGUCcgugcGCACcUUCCUgGC-CCUGGCCg -3'
miRNA:   3'- aCUAGu----UGUGaGAGGA-CGaGGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 510 0.67 0.876738
Target:  5'- cGAUCAgagcuccucgcgGCGCaggcgCUCCaGCUgCCGGCg -3'
miRNA:   3'- aCUAGU------------UGUGa----GAGGaCGAgGGCCGg -5'
25931 3' -55.5 NC_005337.1 + 50608 0.67 0.876738
Target:  5'- cGAUCGACGa---CCUGCg-CCGGCUg -3'
miRNA:   3'- aCUAGUUGUgagaGGACGagGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 119593 0.67 0.876738
Target:  5'- cUGGUCGccgaGCGCUgcaaCUCCUGuCUCgCCGcGCUg -3'
miRNA:   3'- -ACUAGU----UGUGA----GAGGAC-GAG-GGC-CGG- -5'
25931 3' -55.5 NC_005337.1 + 510 0.67 0.876738
Target:  5'- cGAUCAgagcuccucgcgGCGCaggcgCUCCaGCUgCCGGCg -3'
miRNA:   3'- aCUAGU------------UGUGa----GAGGaCGAgGGCCGg -5'
25931 3' -55.5 NC_005337.1 + 119317 0.67 0.87601
Target:  5'- gUGAUCAugugucuGCGCgaggccaUCCUGCgcaaggCCUGGCUc -3'
miRNA:   3'- -ACUAGU-------UGUGag-----AGGACGa-----GGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 89655 0.67 0.869356
Target:  5'- uUGAagAACACUCgagagGCUCCCaGGCg -3'
miRNA:   3'- -ACUagUUGUGAGagga-CGAGGG-CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.