miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25931 3' -55.5 NC_005337.1 + 58574 0.66 0.910197
Target:  5'- cGG-CGAUGCUCUCCgGCgcggaguaCuuGGCCg -3'
miRNA:   3'- aCUaGUUGUGAGAGGaCGa-------GggCCGG- -5'
25931 3' -55.5 NC_005337.1 + 77689 0.68 0.811936
Target:  5'- cGGUCGACgaacucGCUCUCCacggGgUCCCGGa- -3'
miRNA:   3'- aCUAGUUG------UGAGAGGa---CgAGGGCCgg -5'
25931 3' -55.5 NC_005337.1 + 74864 0.68 0.829299
Target:  5'- aGGUCAAgggccUGCUCuUCCUGCgCCCGaCCg -3'
miRNA:   3'- aCUAGUU-----GUGAG-AGGACGaGGGCcGG- -5'
25931 3' -55.5 NC_005337.1 + 17747 0.67 0.849157
Target:  5'- cGAUC-ACGCUCUgCaGCUCCagcaccgucaggaucUGGCCc -3'
miRNA:   3'- aCUAGuUGUGAGAgGaCGAGG---------------GCCGG- -5'
25931 3' -55.5 NC_005337.1 + 46454 0.67 0.861756
Target:  5'- cGAUCuGCGCgcggCgcgCCggcgaGCUCCCGGgCa -3'
miRNA:   3'- aCUAGuUGUGa---Ga--GGa----CGAGGGCCgG- -5'
25931 3' -55.5 NC_005337.1 + 510 0.67 0.876738
Target:  5'- cGAUCAgagcuccucgcgGCGCaggcgCUCCaGCUgCCGGCg -3'
miRNA:   3'- aCUAGU------------UGUGa----GAGGaCGAgGGCCGg -5'
25931 3' -55.5 NC_005337.1 + 100293 0.67 0.876738
Target:  5'- cGGUCcgugcGCACcUUCCUgGC-CCUGGCCg -3'
miRNA:   3'- aCUAGu----UGUGaGAGGA-CGaGGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 115831 0.66 0.890824
Target:  5'- ---cCAACGCUCUCCaGuCUCCCccgcguucGCCg -3'
miRNA:   3'- acuaGUUGUGAGAGGaC-GAGGGc-------CGG- -5'
25931 3' -55.5 NC_005337.1 + 32534 0.66 0.903978
Target:  5'- gGAccUCGugGCUCa---GCUCCCGGCa -3'
miRNA:   3'- aCU--AGUugUGAGaggaCGAGGGCCGg -5'
25931 3' -55.5 NC_005337.1 + 104350 0.68 0.803
Target:  5'- cGGaaGACGCUCUCCaUGCUCauggaGGUCa -3'
miRNA:   3'- aCUagUUGUGAGAGG-ACGAGgg---CCGG- -5'
25931 3' -55.5 NC_005337.1 + 115116 0.68 0.793905
Target:  5'- aUGAUCGugGCcgagaUCUCCgugaGCaUCCCGGgCu -3'
miRNA:   3'- -ACUAGUugUG-----AGAGGa---CG-AGGGCCgG- -5'
25931 3' -55.5 NC_005337.1 + 91226 0.68 0.793905
Target:  5'- gUGGUCAGCGCg-UCCaUGUggUCGGCCa -3'
miRNA:   3'- -ACUAGUUGUGagAGG-ACGagGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 119512 0.77 0.350883
Target:  5'- cGGgaagCAGCACUCgugcaaggCCaGCUCCCGGUCg -3'
miRNA:   3'- aCUa---GUUGUGAGa-------GGaCGAGGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 56706 0.74 0.482856
Target:  5'- gUGGUCAGCGg-CUCCgUGCUCCugaaguacgCGGCCa -3'
miRNA:   3'- -ACUAGUUGUgaGAGG-ACGAGG---------GCCGG- -5'
25931 3' -55.5 NC_005337.1 + 67744 0.72 0.582741
Target:  5'- gGcgCGGCGCgcagCUCCaGCgUCUCGGCCg -3'
miRNA:   3'- aCuaGUUGUGa---GAGGaCG-AGGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 133149 0.72 0.603355
Target:  5'- cUGGUCGcGCGCgugCUgcggCUGCUCCCGGCg -3'
miRNA:   3'- -ACUAGU-UGUGa--GAg---GACGAGGGCCGg -5'
25931 3' -55.5 NC_005337.1 + 133377 0.72 0.617841
Target:  5'- cGcUCGucGCGCUCgggcUCCUGCUcggcgcgcucuuccgCCCGGCCg -3'
miRNA:   3'- aCuAGU--UGUGAG----AGGACGA---------------GGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 121986 0.71 0.650997
Target:  5'- -cAUCGuGCGCgagCUCCUGCgcgcggggugcgaCCCGGCCg -3'
miRNA:   3'- acUAGU-UGUGa--GAGGACGa------------GGGCCGG- -5'
25931 3' -55.5 NC_005337.1 + 85400 0.69 0.764801
Target:  5'- gUGcgCGGCGCUCUCCgccGagaucagcagcauCUCCCGGUa -3'
miRNA:   3'- -ACuaGUUGUGAGAGGa--C-------------GAGGGCCGg -5'
25931 3' -55.5 NC_005337.1 + 89583 0.69 0.765759
Target:  5'- --cUCGuACGC-CUUCUGCaUCUCGGCCa -3'
miRNA:   3'- acuAGU-UGUGaGAGGACG-AGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.