miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25932 3' -42.1 NC_005337.1 + 91659 0.67 1
Target:  5'- -gGUUGAgcagGUAgGuguuguCGAAGCUGAGCGCc -3'
miRNA:   3'- ugCAACU----UAUgCu-----GUUUCGAUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 19204 0.67 1
Target:  5'- gAUGUcGAAgGCG-CAGaaggGGCUGAGCACg -3'
miRNA:   3'- -UGCAaCUUaUGCuGUU----UCGAUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 8429 0.67 1
Target:  5'- cGCGggGAucgcauccgGCGGCGAucAGCUcccgGAACACg -3'
miRNA:   3'- -UGCaaCUua-------UGCUGUU--UCGA----UUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 40837 0.67 1
Target:  5'- gGCGUcGAGUGCGugAAcGC-AGGCAg -3'
miRNA:   3'- -UGCAaCUUAUGCugUUuCGaUUUGUg -5'
25932 3' -42.1 NC_005337.1 + 12165 0.67 1
Target:  5'- cGCGUUGAuguccgcgccGUgcGCGACG-AGCUggucGAGCACc -3'
miRNA:   3'- -UGCAACU----------UA--UGCUGUuUCGA----UUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 74462 0.67 1
Target:  5'- cCGgcGggUuCGACGucucGCUGGACGCg -3'
miRNA:   3'- uGCaaCuuAuGCUGUuu--CGAUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 30202 0.67 1
Target:  5'- cACGUUGGAgggguCGAU--GGCgcGACACa -3'
miRNA:   3'- -UGCAACUUau---GCUGuuUCGauUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 27170 0.67 1
Target:  5'- cGCGUcGAAgACGACGucuugAGGCUccGCGCa -3'
miRNA:   3'- -UGCAaCUUaUGCUGU-----UUCGAuuUGUG- -5'
25932 3' -42.1 NC_005337.1 + 61499 0.67 1
Target:  5'- cGCGUUGAucGCGAUgagGAAGUUGAGgAUc -3'
miRNA:   3'- -UGCAACUuaUGCUG---UUUCGAUUUgUG- -5'
25932 3' -42.1 NC_005337.1 + 36354 0.67 1
Target:  5'- cGCGUccGAGUGCGACuc-GC--GACACa -3'
miRNA:   3'- -UGCAa-CUUAUGCUGuuuCGauUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 2671 0.67 1
Target:  5'- cACGcUGAGUGCGcGCG-AGCUgucgaagauGAGCACg -3'
miRNA:   3'- -UGCaACUUAUGC-UGUuUCGA---------UUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 85541 0.67 1
Target:  5'- gAUGUUGAGcGCGGCGgugagAAGCcccGGCACg -3'
miRNA:   3'- -UGCAACUUaUGCUGU-----UUCGau-UUGUG- -5'
25932 3' -42.1 NC_005337.1 + 92100 0.66 1
Target:  5'- cACGUUGGAcACGAUc---CUGAACAUg -3'
miRNA:   3'- -UGCAACUUaUGCUGuuucGAUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 20474 0.66 1
Target:  5'- uCGUUGAcaGCgcuGACGGGGUUGAGCGu -3'
miRNA:   3'- uGCAACUuaUG---CUGUUUCGAUUUGUg -5'
25932 3' -42.1 NC_005337.1 + 2316 0.66 1
Target:  5'- cGCGUcGA--ACGACuucGAGUUGAGCAg -3'
miRNA:   3'- -UGCAaCUuaUGCUGu--UUCGAUUUGUg -5'
25932 3' -42.1 NC_005337.1 + 54746 0.66 1
Target:  5'- uCGUgugUGAugguGUACGACGAGGCcuucGACAUg -3'
miRNA:   3'- uGCA---ACU----UAUGCUGUUUCGau--UUGUG- -5'
25932 3' -42.1 NC_005337.1 + 98358 0.66 1
Target:  5'- cACGUgGAcggGCGG--AAGCUGGACGCc -3'
miRNA:   3'- -UGCAaCUua-UGCUguUUCGAUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 5396 0.68 1
Target:  5'- aGCGUcUGggUGCG-CAGcAGCU--GCGCa -3'
miRNA:   3'- -UGCA-ACuuAUGCuGUU-UCGAuuUGUG- -5'
25932 3' -42.1 NC_005337.1 + 131646 0.67 1
Target:  5'- gGCGUgucgccaauaacUGAAUaaaaACGugGGAauGCUGAGCACc -3'
miRNA:   3'- -UGCA------------ACUUA----UGCugUUU--CGAUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 62625 0.67 1
Target:  5'- cGCGUUGAAgugcGCGGCcAGGCgcugcugGAAgACg -3'
miRNA:   3'- -UGCAACUUa---UGCUGuUUCGa------UUUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.