miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25932 3' -42.1 NC_005337.1 + 112045 0.67 1
Target:  5'- gACGggUGGAUucCGAUAAAagacaucuguguGCUAAACACa -3'
miRNA:   3'- -UGCa-ACUUAu-GCUGUUU------------CGAUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 34958 0.69 0.999994
Target:  5'- cACGUUGAAggaGCGcaGCGAGuGCgGAACGCg -3'
miRNA:   3'- -UGCAACUUa--UGC--UGUUU-CGaUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 20788 0.69 0.999994
Target:  5'- cGCGggGAcggGCGugcCGGAGCUGGACAg -3'
miRNA:   3'- -UGCaaCUua-UGCu--GUUUCGAUUUGUg -5'
25932 3' -42.1 NC_005337.1 + 51784 0.69 0.999996
Target:  5'- gGCGUUccccGggUGCGACGgcGUUuuGCGCc -3'
miRNA:   3'- -UGCAA----CuuAUGCUGUuuCGAuuUGUG- -5'
25932 3' -42.1 NC_005337.1 + 79032 0.69 0.999996
Target:  5'- cAUGUUGuacACGACGGAGUUcuuGCGCg -3'
miRNA:   3'- -UGCAACuuaUGCUGUUUCGAuu-UGUG- -5'
25932 3' -42.1 NC_005337.1 + 72743 0.68 0.999998
Target:  5'- gGCGUgcucUACGGCAAcgagcucacgaAGCUGGACAUc -3'
miRNA:   3'- -UGCAacuuAUGCUGUU-----------UCGAUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 30202 0.67 1
Target:  5'- cACGUUGGAgggguCGAU--GGCgcGACACa -3'
miRNA:   3'- -UGCAACUUau---GCUGuuUCGauUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 27170 0.67 1
Target:  5'- cGCGUcGAAgACGACGucuugAGGCUccGCGCa -3'
miRNA:   3'- -UGCAaCUUaUGCUGU-----UUCGAuuUGUG- -5'
25932 3' -42.1 NC_005337.1 + 61499 0.67 1
Target:  5'- cGCGUUGAucGCGAUgagGAAGUUGAGgAUc -3'
miRNA:   3'- -UGCAACUuaUGCUG---UUUCGAUUUgUG- -5'
25932 3' -42.1 NC_005337.1 + 11185 0.69 0.999994
Target:  5'- ----cGAAUACGGCGgaGAGCUGGuuCACg -3'
miRNA:   3'- ugcaaCUUAUGCUGU--UUCGAUUu-GUG- -5'
25932 3' -42.1 NC_005337.1 + 68618 0.69 0.999994
Target:  5'- cGCGgugGggUGguuCGGCGcgcAGCUGAGCGCa -3'
miRNA:   3'- -UGCaa-CuuAU---GCUGUu--UCGAUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 966 0.7 0.999983
Target:  5'- gGCGgggcUGGA-GCGGCGGGGCUGgcgcGGCGCg -3'
miRNA:   3'- -UGCa---ACUUaUGCUGUUUCGAU----UUGUG- -5'
25932 3' -42.1 NC_005337.1 + 921 0.8 0.942902
Target:  5'- cGCGgcGGcgGCGGCGAGGCggcgGAGCGCg -3'
miRNA:   3'- -UGCaaCUuaUGCUGUUUCGa---UUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 3804 0.76 0.99438
Target:  5'- -gGUUGAGUACGuACucgcggagGAGGCUGGACAUg -3'
miRNA:   3'- ugCAACUUAUGC-UG--------UUUCGAUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 29451 0.75 0.996621
Target:  5'- uCGUUGGGcGCGuCAGAGCaGAGCACc -3'
miRNA:   3'- uGCAACUUaUGCuGUUUCGaUUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 75602 0.72 0.999746
Target:  5'- gGCGUUGAAgGCGucCAcGAGCUuGGCGCg -3'
miRNA:   3'- -UGCAACUUaUGCu-GU-UUCGAuUUGUG- -5'
25932 3' -42.1 NC_005337.1 + 81138 0.71 0.999851
Target:  5'- uUGUUGGAcACGugGAAGUUGGAcCGCu -3'
miRNA:   3'- uGCAACUUaUGCugUUUCGAUUU-GUG- -5'
25932 3' -42.1 NC_005337.1 + 8494 0.71 0.999937
Target:  5'- gGCGggGAAUACGAUGgcGCUuccCACg -3'
miRNA:   3'- -UGCaaCUUAUGCUGUuuCGAuuuGUG- -5'
25932 3' -42.1 NC_005337.1 + 7047 0.71 0.999937
Target:  5'- cACGUcGGGgcggGCGGCGGGGUUGcGCGCg -3'
miRNA:   3'- -UGCAaCUUa---UGCUGUUUCGAUuUGUG- -5'
25932 3' -42.1 NC_005337.1 + 114744 0.71 0.999954
Target:  5'- gACGUUGGAcuucCGGCAGGGCUcccGAUACc -3'
miRNA:   3'- -UGCAACUUau--GCUGUUUCGAu--UUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.