miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25932 5' -50 NC_005337.1 + 40409 0.66 0.994616
Target:  5'- ---cAUCCGCCACAugagcucguGCagGCGCUCc-- -3'
miRNA:   3'- cauaUAGGUGGUGU---------UGa-CGCGAGacu -5'
25932 5' -50 NC_005337.1 + 107966 0.66 0.994616
Target:  5'- uGUGUAUCCACaGCAGCUaCGUcaUUUGGa -3'
miRNA:   3'- -CAUAUAGGUGgUGUUGAcGCG--AGACU- -5'
25932 5' -50 NC_005337.1 + 75772 0.66 0.993731
Target:  5'- ------aCACCuccguguacuuGCAGCUGCGCUCgcgGAg -3'
miRNA:   3'- cauauagGUGG-----------UGUUGACGCGAGa--CU- -5'
25932 5' -50 NC_005337.1 + 104808 0.66 0.992733
Target:  5'- ---cGUUC-CCGCGGCUgGUGCUCUGc -3'
miRNA:   3'- cauaUAGGuGGUGUUGA-CGCGAGACu -5'
25932 5' -50 NC_005337.1 + 53015 0.66 0.992733
Target:  5'- -----cCCGCC-CGGCUGCgGCUCgUGAc -3'
miRNA:   3'- cauauaGGUGGuGUUGACG-CGAG-ACU- -5'
25932 5' -50 NC_005337.1 + 115459 0.66 0.992733
Target:  5'- -gGUGUCgGCCGgaGACaUGCGC-CUGAa -3'
miRNA:   3'- caUAUAGgUGGUg-UUG-ACGCGaGACU- -5'
25932 5' -50 NC_005337.1 + 50255 0.66 0.992733
Target:  5'- gGUGUGUcCCGCCGCAGaaGCGC-Ca-- -3'
miRNA:   3'- -CAUAUA-GGUGGUGUUgaCGCGaGacu -5'
25932 5' -50 NC_005337.1 + 53732 0.66 0.992626
Target:  5'- cGUGUAcaagauccucuUCCGCCcggagauGCAGCUGCGCgUCg-- -3'
miRNA:   3'- -CAUAU-----------AGGUGG-------UGUUGACGCG-AGacu -5'
25932 5' -50 NC_005337.1 + 80545 0.66 0.991612
Target:  5'- -gAUGUCCACC-CGGCagagggcgaUGCGCUUcaUGGg -3'
miRNA:   3'- caUAUAGGUGGuGUUG---------ACGCGAG--ACU- -5'
25932 5' -50 NC_005337.1 + 104546 0.66 0.991612
Target:  5'- ---gGUCCGCCGCAACaccGCGCg---- -3'
miRNA:   3'- cauaUAGGUGGUGUUGa--CGCGagacu -5'
25932 5' -50 NC_005337.1 + 100964 0.66 0.991612
Target:  5'- ---aGUCCAUCuccaaGCAGCUGCGCgugGAc -3'
miRNA:   3'- cauaUAGGUGG-----UGUUGACGCGagaCU- -5'
25932 5' -50 NC_005337.1 + 62512 0.66 0.991612
Target:  5'- -gGUGUCguCCGCGA-UGCGCUCg-- -3'
miRNA:   3'- caUAUAGguGGUGUUgACGCGAGacu -5'
25932 5' -50 NC_005337.1 + 64979 0.66 0.990358
Target:  5'- ---gGUCCACCgGCucCUGCG-UCUGAu -3'
miRNA:   3'- cauaUAGGUGG-UGuuGACGCgAGACU- -5'
25932 5' -50 NC_005337.1 + 114180 0.66 0.990358
Target:  5'- --cUGUCCACC-CAGCUGgGaagcgguaCUCUGGc -3'
miRNA:   3'- cauAUAGGUGGuGUUGACgC--------GAGACU- -5'
25932 5' -50 NC_005337.1 + 4587 0.66 0.990358
Target:  5'- ------gCGCgGCGACUGCGCgugCUGGu -3'
miRNA:   3'- cauauagGUGgUGUUGACGCGa--GACU- -5'
25932 5' -50 NC_005337.1 + 105944 0.66 0.990358
Target:  5'- ----uUCCACCACGgGCUGCuGUUcCUGGa -3'
miRNA:   3'- cauauAGGUGGUGU-UGACG-CGA-GACU- -5'
25932 5' -50 NC_005337.1 + 54897 0.67 0.988962
Target:  5'- ---cAUCCACCGCAAguuCUGgcCGCUcCUGGa -3'
miRNA:   3'- cauaUAGGUGGUGUU---GAC--GCGA-GACU- -5'
25932 5' -50 NC_005337.1 + 14065 0.67 0.987414
Target:  5'- --cUGUCCGCCuCGGCgagGUGCUCg-- -3'
miRNA:   3'- cauAUAGGUGGuGUUGa--CGCGAGacu -5'
25932 5' -50 NC_005337.1 + 52723 0.67 0.985703
Target:  5'- -----aCCugCGCgAGCUGCGCgccgagCUGAa -3'
miRNA:   3'- cauauaGGugGUG-UUGACGCGa-----GACU- -5'
25932 5' -50 NC_005337.1 + 25923 0.67 0.98382
Target:  5'- ---gGUCCACCGCcguCUccGCGCUCUu- -3'
miRNA:   3'- cauaUAGGUGGUGuu-GA--CGCGAGAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.