miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25932 5' -50 NC_005337.1 + 46110 0.67 0.981754
Target:  5'- -cGUGUCC-CCGCAGCUGguCGUcCUGGu -3'
miRNA:   3'- caUAUAGGuGGUGUUGAC--GCGaGACU- -5'
25932 5' -50 NC_005337.1 + 83006 0.68 0.977038
Target:  5'- -gGUGUCCGCCAUGGCcgccuUGaCGCUCgaGAg -3'
miRNA:   3'- caUAUAGGUGGUGUUG-----AC-GCGAGa-CU- -5'
25932 5' -50 NC_005337.1 + 54661 0.68 0.977038
Target:  5'- ---cAUCCGCUGCGGgcucCUGCGCUCg-- -3'
miRNA:   3'- cauaUAGGUGGUGUU----GACGCGAGacu -5'
25932 5' -50 NC_005337.1 + 74710 0.68 0.97437
Target:  5'- ---cAUCCGCCGCGACcagaUGCGCaUCgacGAg -3'
miRNA:   3'- cauaUAGGUGGUGUUG----ACGCG-AGa--CU- -5'
25932 5' -50 NC_005337.1 + 41455 0.68 0.97437
Target:  5'- ----cUCCACCGCGGgaGCGCugaUCUGu -3'
miRNA:   3'- cauauAGGUGGUGUUgaCGCG---AGACu -5'
25932 5' -50 NC_005337.1 + 29914 0.69 0.957595
Target:  5'- -----gCCGgCGCGACUGCGaCUUUGAa -3'
miRNA:   3'- cauauaGGUgGUGUUGACGC-GAGACU- -5'
25932 5' -50 NC_005337.1 + 67954 0.69 0.957595
Target:  5'- cGUGUcgCCAgcCCGCGACcgcgGCGCUCa-- -3'
miRNA:   3'- -CAUAuaGGU--GGUGUUGa---CGCGAGacu -5'
25932 5' -50 NC_005337.1 + 3913 0.69 0.953082
Target:  5'- ----uUCCACCGCAGCacagaguUGCGgUCUGu -3'
miRNA:   3'- cauauAGGUGGUGUUG-------ACGCgAGACu -5'
25932 5' -50 NC_005337.1 + 104300 0.69 0.949158
Target:  5'- ---gGUCCGCgagggCGCGGCgGCGCUCUGc -3'
miRNA:   3'- cauaUAGGUG-----GUGUUGaCGCGAGACu -5'
25932 5' -50 NC_005337.1 + 21486 0.69 0.949158
Target:  5'- uGUAUGcgCCGCCACGugGCUGaGCUCgcgGAg -3'
miRNA:   3'- -CAUAUa-GGUGGUGU--UGACgCGAGa--CU- -5'
25932 5' -50 NC_005337.1 + 123290 0.7 0.939673
Target:  5'- -cGUGUCCguGCCGCAcgcGCUGCGCg--GAu -3'
miRNA:   3'- caUAUAGG--UGGUGU---UGACGCGagaCU- -5'
25932 5' -50 NC_005337.1 + 48129 0.7 0.939673
Target:  5'- ---gGUCCAUCA--ACUGCGCgCUGAa -3'
miRNA:   3'- cauaUAGGUGGUguUGACGCGaGACU- -5'
25932 5' -50 NC_005337.1 + 90040 0.71 0.904779
Target:  5'- -cAUGUCCGCgACGGCcucgGCGCUCg-- -3'
miRNA:   3'- caUAUAGGUGgUGUUGa---CGCGAGacu -5'
25932 5' -50 NC_005337.1 + 31864 0.71 0.904779
Target:  5'- -cAUGUCCACCGCGuc-GCGCUCc-- -3'
miRNA:   3'- caUAUAGGUGGUGUugaCGCGAGacu -5'
25932 5' -50 NC_005337.1 + 88836 0.71 0.891014
Target:  5'- -cGUA-CCGCCuguacgugauGCAGCUGCGCUCcGAc -3'
miRNA:   3'- caUAUaGGUGG----------UGUUGACGCGAGaCU- -5'
25932 5' -50 NC_005337.1 + 40464 0.72 0.876223
Target:  5'- -gAUAg-CGCCGCAGCUGCGCagccugCUGAc -3'
miRNA:   3'- caUAUagGUGGUGUUGACGCGa-----GACU- -5'
25932 5' -50 NC_005337.1 + 86390 0.73 0.817078
Target:  5'- -cAUGUCCGCCagGCGGCUGCGCg---- -3'
miRNA:   3'- caUAUAGGUGG--UGUUGACGCGagacu -5'
25932 5' -50 NC_005337.1 + 79973 0.74 0.758908
Target:  5'- -gGUGUCCACCACGccCUGCGUggUGAu -3'
miRNA:   3'- caUAUAGGUGGUGUu-GACGCGagACU- -5'
25932 5' -50 NC_005337.1 + 115260 0.75 0.727968
Target:  5'- ----cUCCugCGCGACgcGCGCUCUGGc -3'
miRNA:   3'- cauauAGGugGUGUUGa-CGCGAGACU- -5'
25932 5' -50 NC_005337.1 + 33142 0.8 0.453137
Target:  5'- --uUGUCCACCagguccgcGCAGCcGCGCUCUGAg -3'
miRNA:   3'- cauAUAGGUGG--------UGUUGaCGCGAGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.