miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25933 3' -55.2 NC_005337.1 + 116841 0.66 0.906287
Target:  5'- gUACGGGGACAUcga-CAuGGUGCAGa- -3'
miRNA:   3'- -GUGUCCCUGUGuaagGU-CCACGUCca -5'
25933 3' -55.2 NC_005337.1 + 7499 0.66 0.906287
Target:  5'- cCACGGGGcuGC-CGgucUCCAGGUaccugaagaGCAGGUc -3'
miRNA:   3'- -GUGUCCC--UGuGUa--AGGUCCA---------CGUCCA- -5'
25933 3' -55.2 NC_005337.1 + 3214 0.66 0.879057
Target:  5'- gCGCAGGGuCACGUccgcacCCAGG-GcCAGGa -3'
miRNA:   3'- -GUGUCCCuGUGUAa-----GGUCCaC-GUCCa -5'
25933 3' -55.2 NC_005337.1 + 10214 0.67 0.871661
Target:  5'- gGCAGGGGCAUuggcagcUCCAGccgcgGCAGGc -3'
miRNA:   3'- gUGUCCCUGUGua-----AGGUCca---CGUCCa -5'
25933 3' -55.2 NC_005337.1 + 33974 0.67 0.86404
Target:  5'- uCGCgGGGGACGCAgcCCAGGaUGCGcGUc -3'
miRNA:   3'- -GUG-UCCCUGUGUaaGGUCC-ACGUcCA- -5'
25933 3' -55.2 NC_005337.1 + 38511 0.68 0.804952
Target:  5'- cCGCccGGGCGCg--CCuGGUGCAGGg -3'
miRNA:   3'- -GUGucCCUGUGuaaGGuCCACGUCCa -5'
25933 3' -55.2 NC_005337.1 + 96512 0.68 0.795786
Target:  5'- gGCAGGGgagGCGCG-UCCGGGUuGCucGGGUc -3'
miRNA:   3'- gUGUCCC---UGUGUaAGGUCCA-CG--UCCA- -5'
25933 3' -55.2 NC_005337.1 + 18885 0.68 0.795786
Target:  5'- uCGCAGaaGGGCACcucUUCCAGGUGCGu-- -3'
miRNA:   3'- -GUGUC--CCUGUGu--AAGGUCCACGUcca -5'
25933 3' -55.2 NC_005337.1 + 14679 0.69 0.755703
Target:  5'- gACAGGaGuuGCAgcgcucggcgaCCAGGUGCGGGUa -3'
miRNA:   3'- gUGUCC-CugUGUaa---------GGUCCACGUCCA- -5'
25933 3' -55.2 NC_005337.1 + 9343 0.69 0.737865
Target:  5'- cCGgAGGGACugcuguCGgggUCCAGGgGCAGGg -3'
miRNA:   3'- -GUgUCCCUGu-----GUa--AGGUCCaCGUCCa -5'
25933 3' -55.2 NC_005337.1 + 10898 0.69 0.737865
Target:  5'- uGCGGGGACGgGguaCAGGgGCGGGg -3'
miRNA:   3'- gUGUCCCUGUgUaagGUCCaCGUCCa -5'
25933 3' -55.2 NC_005337.1 + 41151 0.7 0.697187
Target:  5'- gCGCGuccGGGAC-CGUcUCCAGGgGCAGGUc -3'
miRNA:   3'- -GUGU---CCCUGuGUA-AGGUCCaCGUCCA- -5'
25933 3' -55.2 NC_005337.1 + 49933 0.71 0.666043
Target:  5'- gCGCGGGGACAgCAcgaCCAGGcUGgAGGUg -3'
miRNA:   3'- -GUGUCCCUGU-GUaa-GGUCC-ACgUCCA- -5'
25933 3' -55.2 NC_005337.1 + 72378 0.71 0.64512
Target:  5'- -uCGGGGACA---UCguGGUGCAGGg -3'
miRNA:   3'- guGUCCCUGUguaAGguCCACGUCCa -5'
25933 3' -55.2 NC_005337.1 + 95641 0.71 0.634638
Target:  5'- -cCAGGGGCACGggcUCCAGGgGCuccGGGUu -3'
miRNA:   3'- guGUCCCUGUGUa--AGGUCCaCG---UCCA- -5'
25933 3' -55.2 NC_005337.1 + 11530 0.72 0.582363
Target:  5'- gCGCAGGGugGCcg-CCAGGUcguccGCGGGc -3'
miRNA:   3'- -GUGUCCCugUGuaaGGUCCA-----CGUCCa -5'
25933 3' -55.2 NC_005337.1 + 114398 1.08 0.003177
Target:  5'- cCACAGGGACACAUUCCAGGUGCAGGUg -3'
miRNA:   3'- -GUGUCCCUGUGUAAGGUCCACGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.