miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25933 5' -54.8 NC_005337.1 + 102447 0.66 0.935253
Target:  5'- -cGCgUCCACg-GUGGACAugGUCCUg -3'
miRNA:   3'- cuUG-GGGUGgaCACCUGUugUAGGGg -5'
25933 5' -54.8 NC_005337.1 + 83735 0.66 0.935253
Target:  5'- aGAACCCUACCg--GGuCcACAgagCCCUa -3'
miRNA:   3'- -CUUGGGGUGGacaCCuGuUGUa--GGGG- -5'
25933 5' -54.8 NC_005337.1 + 124919 0.66 0.935253
Target:  5'- -uGCCCCugccCCUGgaccccGACAGCAgUCCCUc -3'
miRNA:   3'- cuUGGGGu---GGACac----CUGUUGU-AGGGG- -5'
25933 5' -54.8 NC_005337.1 + 45412 0.66 0.935253
Target:  5'- uGGACUCaACCga-GGAUcugGACGUCCCCg -3'
miRNA:   3'- -CUUGGGgUGGacaCCUG---UUGUAGGGG- -5'
25933 5' -54.8 NC_005337.1 + 30869 0.66 0.935253
Target:  5'- aAGCCCCAgCUGcUGGGCcGCGaCCUUc -3'
miRNA:   3'- cUUGGGGUgGAC-ACCUGuUGUaGGGG- -5'
25933 5' -54.8 NC_005337.1 + 114367 0.66 0.932206
Target:  5'- -cGCCCUACCUGguccagcacgcGGACuacGcgcuccugugccgguGCAUCCCCu -3'
miRNA:   3'- cuUGGGGUGGACa----------CCUG---U---------------UGUAGGGG- -5'
25933 5' -54.8 NC_005337.1 + 122975 0.66 0.93169
Target:  5'- cAACgCCCGCgUGgagacccggaacaUGGGCGugggcgagggccgacACAUCCCCg -3'
miRNA:   3'- cUUG-GGGUGgAC-------------ACCUGU---------------UGUAGGGG- -5'
25933 5' -54.8 NC_005337.1 + 124075 0.66 0.930126
Target:  5'- -uGCCCCugCcgaccaggaUGUGGACGggGCA-CCCg -3'
miRNA:   3'- cuUGGGGugG---------ACACCUGU--UGUaGGGg -5'
25933 5' -54.8 NC_005337.1 + 36572 0.66 0.930126
Target:  5'- -cACCCCACCgGcGaGAagaaGACGUCCaCCa -3'
miRNA:   3'- cuUGGGGUGGaCaC-CUg---UUGUAGG-GG- -5'
25933 5' -54.8 NC_005337.1 + 50380 0.66 0.930126
Target:  5'- -cGCCCCcguACCcgGcGGACAACugCCCCu -3'
miRNA:   3'- cuUGGGG---UGGa-CaCCUGUUGuaGGGG- -5'
25933 5' -54.8 NC_005337.1 + 63860 0.66 0.930126
Target:  5'- aGGGCCUgAUCuUGUGGGCAAgGaCUCCa -3'
miRNA:   3'- -CUUGGGgUGG-ACACCUGUUgUaGGGG- -5'
25933 5' -54.8 NC_005337.1 + 74224 0.66 0.930126
Target:  5'- -cACCUgaACCUGUGGGagcACAUCgCCg -3'
miRNA:   3'- cuUGGGg-UGGACACCUgu-UGUAGgGG- -5'
25933 5' -54.8 NC_005337.1 + 39513 0.66 0.926931
Target:  5'- uGAACCCCACCgcgGgccagcucgcggucgUGGcugcCGGCG-CCCCg -3'
miRNA:   3'- -CUUGGGGUGGa--C---------------ACCu---GUUGUaGGGG- -5'
25933 5' -54.8 NC_005337.1 + 54501 0.66 0.924753
Target:  5'- aGGACCCgCGCCUGgGGGCcuccGACGggUCCa -3'
miRNA:   3'- -CUUGGG-GUGGACaCCUG----UUGUagGGG- -5'
25933 5' -54.8 NC_005337.1 + 23900 0.66 0.924753
Target:  5'- cAACCCCacGCCcGUgGGACGGCugccgCCCUc -3'
miRNA:   3'- cUUGGGG--UGGaCA-CCUGUUGua---GGGG- -5'
25933 5' -54.8 NC_005337.1 + 46990 0.66 0.924753
Target:  5'- cGAGCUUCAUCUucGUGGAgaccgcgaccaaCAACAUCCUg -3'
miRNA:   3'- -CUUGGGGUGGA--CACCU------------GUUGUAGGGg -5'
25933 5' -54.8 NC_005337.1 + 26630 0.66 0.920845
Target:  5'- uGAACCCgccgucguccacgCGCUUGUGGAgGACAcgacacacgugcucgUCCaCCg -3'
miRNA:   3'- -CUUGGG-------------GUGGACACCUgUUGU---------------AGG-GG- -5'
25933 5' -54.8 NC_005337.1 + 8801 0.66 0.919133
Target:  5'- gGAACCCCugCUGcUGGAagAAC-UCCa- -3'
miRNA:   3'- -CUUGGGGugGAC-ACCUg-UUGuAGGgg -5'
25933 5' -54.8 NC_005337.1 + 128816 0.66 0.919133
Target:  5'- -uGCCgcaCCACCgUGUGGuacguCAACuagCCCCg -3'
miRNA:   3'- cuUGG---GGUGG-ACACCu----GUUGua-GGGG- -5'
25933 5' -54.8 NC_005337.1 + 54995 0.66 0.913268
Target:  5'- cGGCCaUCAgcuUCUGgaucGACAACAUCCCCa -3'
miRNA:   3'- cUUGG-GGU---GGACac--CUGUUGUAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.