miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25933 5' -54.8 NC_005337.1 + 2874 0.66 0.913268
Target:  5'- -cGCCUCACCagcGUGGccgGCGGCGUCCg- -3'
miRNA:   3'- cuUGGGGUGGa--CACC---UGUUGUAGGgg -5'
25933 5' -54.8 NC_005337.1 + 8452 0.66 0.907159
Target:  5'- -cGCUUCACCgccgaUGUGcGGCAgcaggaACAUCCCCc -3'
miRNA:   3'- cuUGGGGUGG-----ACAC-CUGU------UGUAGGGG- -5'
25933 5' -54.8 NC_005337.1 + 8801 0.66 0.919133
Target:  5'- gGAACCCCugCUGcUGGAagAAC-UCCa- -3'
miRNA:   3'- -CUUGGGGugGAC-ACCUg-UUGuAGGgg -5'
25933 5' -54.8 NC_005337.1 + 12193 0.68 0.857026
Target:  5'- ---gCCCACCUGcagcgacgacaccUccgcGGGCAGCGUCUCCa -3'
miRNA:   3'- cuugGGGUGGAC-------------A----CCUGUUGUAGGGG- -5'
25933 5' -54.8 NC_005337.1 + 13790 0.68 0.849875
Target:  5'- aGGGCgUCGCCggacacGUGGGCGAUG-CCCCg -3'
miRNA:   3'- -CUUGgGGUGGa-----CACCUGUUGUaGGGG- -5'
25933 5' -54.8 NC_005337.1 + 13858 0.68 0.824879
Target:  5'- uGAGCUCCGCCUccgggacggucGUGGGCAGCGUgUa- -3'
miRNA:   3'- -CUUGGGGUGGA-----------CACCUGUUGUAgGgg -5'
25933 5' -54.8 NC_005337.1 + 14367 0.67 0.900807
Target:  5'- cGAugCCCGCCagGUGGuccuugAUGACGUCCa- -3'
miRNA:   3'- -CUugGGGUGGa-CACC------UGUUGUAGGgg -5'
25933 5' -54.8 NC_005337.1 + 18842 0.69 0.819677
Target:  5'- gGAACCCCagcgacucccggacgGCCgGcGaGACGGCGUCCUCg -3'
miRNA:   3'- -CUUGGGG---------------UGGaCaC-CUGUUGUAGGGG- -5'
25933 5' -54.8 NC_005337.1 + 19970 0.68 0.830015
Target:  5'- aGggUgCCGCCgucacucguggagGUGGugGACAcagucUCCCCu -3'
miRNA:   3'- -CuuGgGGUGGa------------CACCugUUGU-----AGGGG- -5'
25933 5' -54.8 NC_005337.1 + 23121 0.72 0.649387
Target:  5'- cAACCCCGCC-GUGGucGCGGCcaugcgCCCCu -3'
miRNA:   3'- cUUGGGGUGGaCACC--UGUUGua----GGGG- -5'
25933 5' -54.8 NC_005337.1 + 23900 0.66 0.924753
Target:  5'- cAACCCCacGCCcGUgGGACGGCugccgCCCUc -3'
miRNA:   3'- cUUGGGG--UGGaCA-CCUGUUGua---GGGG- -5'
25933 5' -54.8 NC_005337.1 + 26630 0.66 0.920845
Target:  5'- uGAACCCgccgucguccacgCGCUUGUGGAgGACAcgacacacgugcucgUCCaCCg -3'
miRNA:   3'- -CUUGGG-------------GUGGACACCUgUUGU---------------AGG-GG- -5'
25933 5' -54.8 NC_005337.1 + 27224 0.73 0.575857
Target:  5'- -cGCCgCCGCCagGUccucgucGGACAGCAUCUCCg -3'
miRNA:   3'- cuUGG-GGUGGa-CA-------CCUGUUGUAGGGG- -5'
25933 5' -54.8 NC_005337.1 + 28734 0.68 0.833402
Target:  5'- -uGCCCCAgCggGUGGACGcgcuGCugaagCCCCu -3'
miRNA:   3'- cuUGGGGUgGa-CACCUGU----UGua---GGGG- -5'
25933 5' -54.8 NC_005337.1 + 30869 0.66 0.935253
Target:  5'- aAGCCCCAgCUGcUGGGCcGCGaCCUUc -3'
miRNA:   3'- cUUGGGGUgGAC-ACCUGuUGUaGGGG- -5'
25933 5' -54.8 NC_005337.1 + 31264 0.74 0.516194
Target:  5'- uGAGCCCCACCUGcGGGCcGCG-CUCg -3'
miRNA:   3'- -CUUGGGGUGGACaCCUGuUGUaGGGg -5'
25933 5' -54.8 NC_005337.1 + 31867 0.71 0.700904
Target:  5'- gGAuguCCCCGCCcGUGGGCAcggucuucGCGcUCUCCa -3'
miRNA:   3'- -CUu--GGGGUGGaCACCUGU--------UGU-AGGGG- -5'
25933 5' -54.8 NC_005337.1 + 36572 0.66 0.930126
Target:  5'- -cACCCCACCgGcGaGAagaaGACGUCCaCCa -3'
miRNA:   3'- cuUGGGGUGGaCaC-CUg---UUGUAGG-GG- -5'
25933 5' -54.8 NC_005337.1 + 37803 0.67 0.900807
Target:  5'- aGGCCCCGCCggaaacGUGGcgccauACAGCGUUCUUc -3'
miRNA:   3'- cUUGGGGUGGa-----CACC------UGUUGUAGGGG- -5'
25933 5' -54.8 NC_005337.1 + 38062 0.72 0.639006
Target:  5'- cAGCCCCACCaccgaguagaUGUGGcACAGCAgguuggugaaUCCCa -3'
miRNA:   3'- cUUGGGGUGG----------ACACC-UGUUGU----------AGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.