miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25934 3' -58.5 NC_005337.1 + 47740 0.66 0.785
Target:  5'- aCAUCCUCAUcUCCG-GGGaCAUGGUGUa -3'
miRNA:   3'- -GUAGGGGUGcGGGUgCCC-GUACUACA- -5'
25934 3' -58.5 NC_005337.1 + 17668 0.66 0.785
Target:  5'- aCGUCCaCGCGCCgCAcCGcGGCGuUGAUGg -3'
miRNA:   3'- -GUAGGgGUGCGG-GU-GC-CCGU-ACUACa -5'
25934 3' -58.5 NC_005337.1 + 36751 0.66 0.775772
Target:  5'- --gCCCgGCaucUCCACGGGCAcGGUGUg -3'
miRNA:   3'- guaGGGgUGc--GGGUGCCCGUaCUACA- -5'
25934 3' -58.5 NC_005337.1 + 16081 0.66 0.775772
Target:  5'- --gCUCCGCGCCCACcGGCGcGAg-- -3'
miRNA:   3'- guaGGGGUGCGGGUGcCCGUaCUaca -5'
25934 3' -58.5 NC_005337.1 + 63438 0.66 0.775772
Target:  5'- -uUCUCCGCGUUCuCGGGCGUguucggcugGAUGUc -3'
miRNA:   3'- guAGGGGUGCGGGuGCCCGUA---------CUACA- -5'
25934 3' -58.5 NC_005337.1 + 28248 0.66 0.775772
Target:  5'- cCGUCgcgcggcaCCACGCgCACGuGCGUGGUGUc -3'
miRNA:   3'- -GUAGg-------GGUGCGgGUGCcCGUACUACA- -5'
25934 3' -58.5 NC_005337.1 + 42533 0.66 0.766416
Target:  5'- uGUUCCCgccggACGCgCUGCGGGCGcUGGUGc -3'
miRNA:   3'- gUAGGGG-----UGCG-GGUGCCCGU-ACUACa -5'
25934 3' -58.5 NC_005337.1 + 6842 0.66 0.765474
Target:  5'- gAUUCCUugGCCCGCGGcacggucGCcagGUGGUGc -3'
miRNA:   3'- gUAGGGGugCGGGUGCC-------CG---UACUACa -5'
25934 3' -58.5 NC_005337.1 + 58391 0.66 0.756942
Target:  5'- --gCUCgCugGUCCAgCGGuGCAUGAUGUa -3'
miRNA:   3'- guaGGG-GugCGGGU-GCC-CGUACUACA- -5'
25934 3' -58.5 NC_005337.1 + 5842 0.66 0.747359
Target:  5'- --aCCCgGcCGCCCGCGGGgAcccccUGGUGg -3'
miRNA:   3'- guaGGGgU-GCGGGUGCCCgU-----ACUACa -5'
25934 3' -58.5 NC_005337.1 + 97056 0.66 0.747359
Target:  5'- uCAUCgCCACGCaCgCGCGGcGCGcGGUGg -3'
miRNA:   3'- -GUAGgGGUGCG-G-GUGCC-CGUaCUACa -5'
25934 3' -58.5 NC_005337.1 + 95831 0.66 0.747359
Target:  5'- ---gCgUACGCCU-CGGGCGUGAUGa -3'
miRNA:   3'- guagGgGUGCGGGuGCCCGUACUACa -5'
25934 3' -58.5 NC_005337.1 + 85965 0.66 0.744464
Target:  5'- aCAUCCCCGUGCCC-CGcuggagguacucccGGC-UGAUGUc -3'
miRNA:   3'- -GUAGGGGUGCGGGuGC--------------CCGuACUACA- -5'
25934 3' -58.5 NC_005337.1 + 10714 0.67 0.737675
Target:  5'- --aCUCCGCGUCCACGGcCAUG-UGg -3'
miRNA:   3'- guaGGGGUGCGGGUGCCcGUACuACa -5'
25934 3' -58.5 NC_005337.1 + 128424 0.67 0.718042
Target:  5'- -cUCCCCACcagggggucCCCGCGGGCGgccgGGUa- -3'
miRNA:   3'- guAGGGGUGc--------GGGUGCCCGUa---CUAca -5'
25934 3' -58.5 NC_005337.1 + 109166 0.67 0.717052
Target:  5'- gCGUCCgcgcgcgCCGCGCCgCGCGGGCG-GAg-- -3'
miRNA:   3'- -GUAGG-------GGUGCGG-GUGCCCGUaCUaca -5'
25934 3' -58.5 NC_005337.1 + 96580 0.67 0.708112
Target:  5'- --aCCUCACGCgCGCGGGCGUc---- -3'
miRNA:   3'- guaGGGGUGCGgGUGCCCGUAcuaca -5'
25934 3' -58.5 NC_005337.1 + 6400 0.67 0.708112
Target:  5'- uCGUCCCCgggugcguggacAUGCCCGUGaGGCA-GAUGUg -3'
miRNA:   3'- -GUAGGGG------------UGCGGGUGC-CCGUaCUACA- -5'
25934 3' -58.5 NC_005337.1 + 13184 0.67 0.708112
Target:  5'- uCcgCCUCGCgGUUCACGGGgAUGAUGc -3'
miRNA:   3'- -GuaGGGGUG-CGGGUGCCCgUACUACa -5'
25934 3' -58.5 NC_005337.1 + 102442 0.67 0.698118
Target:  5'- -uUCUCCGCGUCCACGGuggaCAUGGUc- -3'
miRNA:   3'- guAGGGGUGCGGGUGCCc---GUACUAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.