miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25934 3' -58.5 NC_005337.1 + 114787 1.07 0.001927
Target:  5'- uCAUCCCCACGCCCACGGGCAUGAUGUa -3'
miRNA:   3'- -GUAGGGGUGCGGGUGCCCGUACUACA- -5'
25934 3' -58.5 NC_005337.1 + 100999 0.77 0.213319
Target:  5'- uCGUCgCCACGCUCGCGGGCcucugGAUGg -3'
miRNA:   3'- -GUAGgGGUGCGGGUGCCCGua---CUACa -5'
25934 3' -58.5 NC_005337.1 + 133559 0.76 0.265027
Target:  5'- gCGUaCCCCGCGgCCGCGGGCGUGc--- -3'
miRNA:   3'- -GUA-GGGGUGCgGGUGCCCGUACuaca -5'
25934 3' -58.5 NC_005337.1 + 133559 0.76 0.265027
Target:  5'- gCGUaCCCCGCGgCCGCGGGCGUGc--- -3'
miRNA:   3'- -GUA-GGGGUGCgGGUGCCCGUACuaca -5'
25934 3' -58.5 NC_005337.1 + 19185 0.75 0.284393
Target:  5'- ---aCCCGCuCuCCACGGGCGUGAUGUc -3'
miRNA:   3'- guagGGGUGcG-GGUGCCCGUACUACA- -5'
25934 3' -58.5 NC_005337.1 + 88558 0.75 0.297915
Target:  5'- uCAUCgCCACGCUgGCGGGCcgGggGUu -3'
miRNA:   3'- -GUAGgGGUGCGGgUGCCCGuaCuaCA- -5'
25934 3' -58.5 NC_005337.1 + 12752 0.73 0.389387
Target:  5'- cCGUCUCCACGUCCGCGuaGCA-GAUGUa -3'
miRNA:   3'- -GUAGGGGUGCGGGUGCc-CGUaCUACA- -5'
25934 3' -58.5 NC_005337.1 + 53750 0.73 0.389387
Target:  5'- aCAUCUCCGCGCCC-CGGGCcucGgcGUg -3'
miRNA:   3'- -GUAGGGGUGCGGGuGCCCGua-CuaCA- -5'
25934 3' -58.5 NC_005337.1 + 46189 0.72 0.397796
Target:  5'- gCGUCCaCCAUGUCCACGGccuGCAUGAg-- -3'
miRNA:   3'- -GUAGG-GGUGCGGGUGCC---CGUACUaca -5'
25934 3' -58.5 NC_005337.1 + 36204 0.72 0.423707
Target:  5'- gCAUCUCCGagaCCACGGGCAUGAg-- -3'
miRNA:   3'- -GUAGGGGUgcgGGUGCCCGUACUaca -5'
25934 3' -58.5 NC_005337.1 + 97905 0.71 0.487865
Target:  5'- gCGUaCUCCAgccaggggccgcCGCCCGUGGGCGUGAUGg -3'
miRNA:   3'- -GUA-GGGGU------------GCGGGUGCCCGUACUACa -5'
25934 3' -58.5 NC_005337.1 + 72598 0.71 0.487865
Target:  5'- --cCUCCGgguCGCgCGCGGGCGUGGUGg -3'
miRNA:   3'- guaGGGGU---GCGgGUGCCCGUACUACa -5'
25934 3' -58.5 NC_005337.1 + 74880 0.71 0.491672
Target:  5'- -cUUCCUGCGCCCGaccgaggacgccggGGGCGUGAUGg -3'
miRNA:   3'- guAGGGGUGCGGGUg-------------CCCGUACUACa -5'
25934 3' -58.5 NC_005337.1 + 36350 0.7 0.55624
Target:  5'- aCcgCCaUCACGCCCACGGGCG-GcgGc -3'
miRNA:   3'- -GuaGG-GGUGCGGGUGCCCGUaCuaCa -5'
25934 3' -58.5 NC_005337.1 + 79975 0.7 0.55624
Target:  5'- uGUCCaCCACGCCCuGCGuGGU--GAUGUa -3'
miRNA:   3'- gUAGG-GGUGCGGG-UGC-CCGuaCUACA- -5'
25934 3' -58.5 NC_005337.1 + 18915 0.69 0.56626
Target:  5'- -cUCCCCaccACGUCCGCGGGCAc----- -3'
miRNA:   3'- guAGGGG---UGCGGGUGCCCGUacuaca -5'
25934 3' -58.5 NC_005337.1 + 61674 0.69 0.576325
Target:  5'- --aCCaCCACGCCCGCGcgcgacccggaGGCGUcGGUGUu -3'
miRNA:   3'- guaGG-GGUGCGGGUGC-----------CCGUA-CUACA- -5'
25934 3' -58.5 NC_005337.1 + 82065 0.69 0.576325
Target:  5'- ----gCCACGuCCCG-GGGCGUGAUGUa -3'
miRNA:   3'- guaggGGUGC-GGGUgCCCGUACUACA- -5'
25934 3' -58.5 NC_005337.1 + 131584 0.69 0.580362
Target:  5'- gCGUCCCCACGCCgCagcuccggacguccuGCGGGC-UGGa-- -3'
miRNA:   3'- -GUAGGGGUGCGG-G---------------UGCCCGuACUaca -5'
25934 3' -58.5 NC_005337.1 + 95912 0.69 0.58643
Target:  5'- gGUgUCCACGCCCGuCGuGuGCGUGAUGc -3'
miRNA:   3'- gUAgGGGUGCGGGU-GC-C-CGUACUACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.