miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25934 5' -57.9 NC_005337.1 + 120491 0.66 0.813338
Target:  5'- gGACACGAGCUacgaccuggcgcCCCUcgccgcguucgGGcGCGcGGAGAu -3'
miRNA:   3'- gCUGUGCUCGA------------GGGA-----------CCaCGU-CCUCU- -5'
25934 5' -57.9 NC_005337.1 + 35705 0.66 0.804579
Target:  5'- gCGAgCGCGGGCUCCgUcuaccGGUGCGuGGAc- -3'
miRNA:   3'- -GCU-GUGCUCGAGGgA-----CCACGU-CCUcu -5'
25934 5' -57.9 NC_005337.1 + 107655 0.66 0.795665
Target:  5'- aCGACgGCGGGUUCaCCgUGGaGCuGGAGGa -3'
miRNA:   3'- -GCUG-UGCUCGAG-GG-ACCaCGuCCUCU- -5'
25934 5' -57.9 NC_005337.1 + 33094 0.66 0.795665
Target:  5'- gCGACGCGGcccGCUgCCCUGuGUGguGGu-- -3'
miRNA:   3'- -GCUGUGCU---CGA-GGGAC-CACguCCucu -5'
25934 5' -57.9 NC_005337.1 + 51717 0.67 0.777407
Target:  5'- gCGACGCgcugaugaucGAGCUgCCUGGcgGCAGGc-- -3'
miRNA:   3'- -GCUGUG----------CUCGAgGGACCa-CGUCCucu -5'
25934 5' -57.9 NC_005337.1 + 97864 0.67 0.758632
Target:  5'- -cGCGCGAGgaCUCCgUGGUggagguGCAGGAGu -3'
miRNA:   3'- gcUGUGCUC--GAGGgACCA------CGUCCUCu -5'
25934 5' -57.9 NC_005337.1 + 73890 0.67 0.739414
Target:  5'- gGACAuCGAGgUCugCCUGG-GCAGcGAGAu -3'
miRNA:   3'- gCUGU-GCUCgAG--GGACCaCGUC-CUCU- -5'
25934 5' -57.9 NC_005337.1 + 46244 0.67 0.729662
Target:  5'- gCGugGCGAGCgugaCCUGGaUGguGGGc- -3'
miRNA:   3'- -GCugUGCUCGag--GGACC-ACguCCUcu -5'
25934 5' -57.9 NC_005337.1 + 46461 0.67 0.729662
Target:  5'- gGACGCGuGCgacUUCCUGGUGguGuGGGu -3'
miRNA:   3'- gCUGUGCuCG---AGGGACCACguC-CUCu -5'
25934 5' -57.9 NC_005337.1 + 88969 0.68 0.719825
Target:  5'- gGGCGCGGucccgguguGCgaCCUGGcGCGGGAGAa -3'
miRNA:   3'- gCUGUGCU---------CGagGGACCaCGUCCUCU- -5'
25934 5' -57.9 NC_005337.1 + 49772 0.68 0.719825
Target:  5'- aGGcCACGAGCUUCUcGGUcGCAGaGGGGg -3'
miRNA:   3'- gCU-GUGCUCGAGGGaCCA-CGUC-CUCU- -5'
25934 5' -57.9 NC_005337.1 + 38508 0.68 0.699938
Target:  5'- uGGCcgccCGGGCgCgCCUGGUGCAGGGc- -3'
miRNA:   3'- gCUGu---GCUCGaG-GGACCACGUCCUcu -5'
25934 5' -57.9 NC_005337.1 + 84601 0.68 0.689906
Target:  5'- uGAcCACGAGCgacgCCgUGGUGCuGGGc- -3'
miRNA:   3'- gCU-GUGCUCGa---GGgACCACGuCCUcu -5'
25934 5' -57.9 NC_005337.1 + 117410 0.69 0.66362
Target:  5'- aCGACAUcguggacuucgaGAGCguguccaacucggccUUCCUGGUGCAcGGGGAc -3'
miRNA:   3'- -GCUGUG------------CUCG---------------AGGGACCACGU-CCUCU- -5'
25934 5' -57.9 NC_005337.1 + 93654 0.69 0.65854
Target:  5'- aCGACGucuucguCGAGCUCCUggagguccguuUGGUGCgugaggaagAGGAGGa -3'
miRNA:   3'- -GCUGU-------GCUCGAGGG-----------ACCACG---------UCCUCU- -5'
25934 5' -57.9 NC_005337.1 + 4585 0.7 0.578243
Target:  5'- gGGCGCGGcgacuGCgcgUgCUGGUGCAGGAGc -3'
miRNA:   3'- gCUGUGCU-----CGa--GgGACCACGUCCUCu -5'
25934 5' -57.9 NC_005337.1 + 1897 0.7 0.578243
Target:  5'- cCGGUACGA-CUCCgcgugCUGGUGCAGGAGc -3'
miRNA:   3'- -GCUGUGCUcGAGG-----GACCACGUCCUCu -5'
25934 5' -57.9 NC_005337.1 + 84721 0.7 0.548184
Target:  5'- gGACaACGAGCUgaagguggUGGUGCGGGAGAu -3'
miRNA:   3'- gCUG-UGCUCGAggg-----ACCACGUCCUCU- -5'
25934 5' -57.9 NC_005337.1 + 133075 0.71 0.528417
Target:  5'- gCGGCGCcgguGGC-CgCCUGGaUGCAGGAGAu -3'
miRNA:   3'- -GCUGUGc---UCGaG-GGACC-ACGUCCUCU- -5'
25934 5' -57.9 NC_005337.1 + 3478 0.71 0.499285
Target:  5'- uCGuCGCGAcuGCgcgUgCUGGUGCAGGAGGu -3'
miRNA:   3'- -GCuGUGCU--CGa--GgGACCACGUCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.