miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25935 3' -55.8 NC_005337.1 + 44720 0.66 0.899681
Target:  5'- --aCGUgcGGCCGGGAccUCUCCaacGAGCGc -3'
miRNA:   3'- cuaGCA--CCGGCUCU--AGAGGca-CUCGU- -5'
25935 3' -55.8 NC_005337.1 + 84518 0.66 0.893073
Target:  5'- -cUCGUGGCCuccGAGGUCcCCGagGAcGCGg -3'
miRNA:   3'- cuAGCACCGG---CUCUAGaGGCa-CU-CGU- -5'
25935 3' -55.8 NC_005337.1 + 61134 0.66 0.893073
Target:  5'- --aUGaUGGCCGuGuacacCUCCGUGAGUAg -3'
miRNA:   3'- cuaGC-ACCGGCuCua---GAGGCACUCGU- -5'
25935 3' -55.8 NC_005337.1 + 99139 0.66 0.87916
Target:  5'- cGAUCcUGGCCGAGugcgCCGcacUGGGCGu -3'
miRNA:   3'- -CUAGcACCGGCUCuagaGGC---ACUCGU- -5'
25935 3' -55.8 NC_005337.1 + 21922 0.67 0.856617
Target:  5'- uGGagGUGGCCGcGcgCUCCGccGAGCu -3'
miRNA:   3'- -CUagCACCGGCuCuaGAGGCa-CUCGu -5'
25935 3' -55.8 NC_005337.1 + 47710 0.67 0.851879
Target:  5'- aGAUCGUGGCCuacgugaacGAGAgcgggaacauccucaUCUCCG-GGGaCAu -3'
miRNA:   3'- -CUAGCACCGG---------CUCU---------------AGAGGCaCUC-GU- -5'
25935 3' -55.8 NC_005337.1 + 49636 0.67 0.84054
Target:  5'- cGUUGUcGCUgaugGAGAcCUCCGUGAGCGu -3'
miRNA:   3'- cUAGCAcCGG----CUCUaGAGGCACUCGU- -5'
25935 3' -55.8 NC_005337.1 + 124296 0.67 0.832208
Target:  5'- --cCGUGGCCGAGGacgcggcCUCCGUcgcGGCGc -3'
miRNA:   3'- cuaGCACCGGCUCUa------GAGGCAc--UCGU- -5'
25935 3' -55.8 NC_005337.1 + 44643 0.67 0.832208
Target:  5'- uGAUCGUGcGCCGcagcgGGcgCUaCGUGGGCGa -3'
miRNA:   3'- -CUAGCAC-CGGC-----UCuaGAgGCACUCGU- -5'
25935 3' -55.8 NC_005337.1 + 43142 0.67 0.832208
Target:  5'- -cUCGUuGCCGAaguacucgguGAUCUCCGUGAuCAg -3'
miRNA:   3'- cuAGCAcCGGCU----------CUAGAGGCACUcGU- -5'
25935 3' -55.8 NC_005337.1 + 116547 0.67 0.823689
Target:  5'- uGAUCGUGaCCGAGuUCaccaagaCCGUGGGCu -3'
miRNA:   3'- -CUAGCACcGGCUCuAGa------GGCACUCGu -5'
25935 3' -55.8 NC_005337.1 + 102452 0.67 0.821099
Target:  5'- cAUCGcGGCCGAGcacgccaagcagaaGUCcCCGcUGAGCAa -3'
miRNA:   3'- cUAGCaCCGGCUC--------------UAGaGGC-ACUCGU- -5'
25935 3' -55.8 NC_005337.1 + 42539 0.68 0.806126
Target:  5'- cGcgCGUGGCCGGGggCUaCGUGcGCu -3'
miRNA:   3'- -CuaGCACCGGCUCuaGAgGCACuCGu -5'
25935 3' -55.8 NC_005337.1 + 86494 0.68 0.797098
Target:  5'- uGcgCGUGGCgGAGGagUCCGaGAGCc -3'
miRNA:   3'- -CuaGCACCGgCUCUagAGGCaCUCGu -5'
25935 3' -55.8 NC_005337.1 + 92737 0.68 0.797098
Target:  5'- -cUCGUGGCCGcGAccgacaUCCGcGAGCGg -3'
miRNA:   3'- cuAGCACCGGCuCUag----AGGCaCUCGU- -5'
25935 3' -55.8 NC_005337.1 + 133043 0.68 0.797098
Target:  5'- cGUCGUGuaCGGgcccGAUCUCCGaGAGCGc -3'
miRNA:   3'- cUAGCACcgGCU----CUAGAGGCaCUCGU- -5'
25935 3' -55.8 NC_005337.1 + 11536 0.69 0.759554
Target:  5'- ---gGUGGCCGccAGGUCgUCCGcGGGCAc -3'
miRNA:   3'- cuagCACCGGC--UCUAG-AGGCaCUCGU- -5'
25935 3' -55.8 NC_005337.1 + 44224 0.69 0.720165
Target:  5'- cAUCGaccGGCU--GGUCUCCGUGGGCGg -3'
miRNA:   3'- cUAGCa--CCGGcuCUAGAGGCACUCGU- -5'
25935 3' -55.8 NC_005337.1 + 38595 0.7 0.710101
Target:  5'- --gCGUGGCgCGAGcgCagCGUGGGCGu -3'
miRNA:   3'- cuaGCACCG-GCUCuaGagGCACUCGU- -5'
25935 3' -55.8 NC_005337.1 + 106636 0.7 0.69997
Target:  5'- aGAUCGUGGCgCGcuccgccaAGAUC-CCG-GAGCGc -3'
miRNA:   3'- -CUAGCACCG-GC--------UCUAGaGGCaCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.