miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25935 5' -59.7 NC_005337.1 + 124013 0.65 0.735442
Target:  5'- -gCGccGCCGCCgaUGGAGGcgccccgcgaagGCCGcGCGCCu -3'
miRNA:   3'- aaGC--UGGUGG--ACCUCUa-----------CGGC-CGCGG- -5'
25935 5' -59.7 NC_005337.1 + 1414 0.66 0.727673
Target:  5'- -gCGAUCACCacguugcugacgUGGuGuAUGCCGGCGaUCg -3'
miRNA:   3'- aaGCUGGUGG------------ACCuC-UACGGCCGC-GG- -5'
25935 5' -59.7 NC_005337.1 + 56603 0.66 0.727673
Target:  5'- gUCGACCGcuuCCUGGccuucGCCGGcCGCg -3'
miRNA:   3'- aAGCUGGU---GGACCucua-CGGCC-GCGg -5'
25935 5' -59.7 NC_005337.1 + 111038 0.66 0.727673
Target:  5'- -aCGACCuccCCUGGAgGAUGaCgCGGCGg- -3'
miRNA:   3'- aaGCUGGu--GGACCU-CUAC-G-GCCGCgg -5'
25935 5' -59.7 NC_005337.1 + 96583 0.66 0.727673
Target:  5'- cUCGGCguCCUGGAc--GCCGcCGCCc -3'
miRNA:   3'- aAGCUGguGGACCUcuaCGGCcGCGG- -5'
25935 5' -59.7 NC_005337.1 + 93285 0.66 0.726698
Target:  5'- -cUGGCCGCCgUGGcAGAgcgggacUGCgUGGCGCUg -3'
miRNA:   3'- aaGCUGGUGG-ACC-UCU-------ACG-GCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 58022 0.66 0.71789
Target:  5'- --aGGCgACCUucGGGGAcgGCCGuGCGCUc -3'
miRNA:   3'- aagCUGgUGGA--CCUCUa-CGGC-CGCGG- -5'
25935 5' -59.7 NC_005337.1 + 97707 0.66 0.71789
Target:  5'- cUUCuuCuCGCCggUGGGGuggcucGCCGGCGCCg -3'
miRNA:   3'- -AAGcuG-GUGG--ACCUCua----CGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 105140 0.66 0.71789
Target:  5'- -aCGGCCgucGCCgacaUGGuGcUGCUGGCGCUg -3'
miRNA:   3'- aaGCUGG---UGG----ACCuCuACGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 5920 0.66 0.71789
Target:  5'- -gCGAgCGCgagcggGGAGAcGCCGGCGUUg -3'
miRNA:   3'- aaGCUgGUGga----CCUCUaCGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 45067 0.66 0.71789
Target:  5'- -cCGGCCGgCcGGAGAuccgUGCCGacGUGCCc -3'
miRNA:   3'- aaGCUGGUgGaCCUCU----ACGGC--CGCGG- -5'
25935 5' -59.7 NC_005337.1 + 33553 0.66 0.71789
Target:  5'- -aCGugCACgucgaagaaCUGcGAGA-GCgCGGCGCCg -3'
miRNA:   3'- aaGCugGUG---------GAC-CUCUaCG-GCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 125905 0.66 0.71789
Target:  5'- -cUGGCCAUUgGGAGcucGUGCCG-CGCCu -3'
miRNA:   3'- aaGCUGGUGGaCCUC---UACGGCcGCGG- -5'
25935 5' -59.7 NC_005337.1 + 113696 0.66 0.71789
Target:  5'- -cCGACCcugaGCCcaUGGAGAcggagUGCacguaccuCGGCGCCu -3'
miRNA:   3'- aaGCUGG----UGG--ACCUCU-----ACG--------GCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 25751 0.66 0.71789
Target:  5'- -cUGACUGCUgucgGGAGA--CUGGCGCCc -3'
miRNA:   3'- aaGCUGGUGGa---CCUCUacGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 35692 0.66 0.71789
Target:  5'- cUUCGACCGgCUGGcGAgcGCgGGCuCCg -3'
miRNA:   3'- -AAGCUGGUgGACCuCUa-CGgCCGcGG- -5'
25935 5' -59.7 NC_005337.1 + 73441 0.66 0.715924
Target:  5'- aUCGugCGCCaguucuucgcgcGGcGGUGCCGcGUGCCc -3'
miRNA:   3'- aAGCugGUGGa-----------CCuCUACGGC-CGCGG- -5'
25935 5' -59.7 NC_005337.1 + 93272 0.66 0.708035
Target:  5'- -gUGGCgagGCC-GGGGGUGCguCGGCGCCu -3'
miRNA:   3'- aaGCUGg--UGGaCCUCUACG--GCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 24346 0.66 0.708035
Target:  5'- -cUGACCGCgCUGGAGAgcaUGCCcaCGCg -3'
miRNA:   3'- aaGCUGGUG-GACCUCU---ACGGccGCGg -5'
25935 5' -59.7 NC_005337.1 + 21565 0.66 0.708035
Target:  5'- --gGGCCGCagaGGAucgucuUGCCGGUGCCu -3'
miRNA:   3'- aagCUGGUGga-CCUcu----ACGGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.