Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25935 | 5' | -59.7 | NC_005337.1 | + | 124013 | 0.65 | 0.735442 |
Target: 5'- -gCGccGCCGCCgaUGGAGGcgccccgcgaagGCCGcGCGCCu -3' miRNA: 3'- aaGC--UGGUGG--ACCUCUa-----------CGGC-CGCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 45923 | 0.66 | 0.687145 |
Target: 5'- uUUgGACCaggaagucgcagaGCCUGGAGAgcgcGCCGgaGCGCa -3' miRNA: 3'- -AAgCUGG-------------UGGACCUCUa---CGGC--CGCGg -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 128733 | 0.66 | 0.708035 |
Target: 5'- -gCGAgCCGCuCUGGAGcgcGUgacagagcuccGCCGGCGCg -3' miRNA: 3'- aaGCU-GGUG-GACCUC---UA-----------CGGCCGCGg -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 96583 | 0.66 | 0.727673 |
Target: 5'- cUCGGCguCCUGGAc--GCCGcCGCCc -3' miRNA: 3'- aAGCUGguGGACCUcuaCGGCcGCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 45067 | 0.66 | 0.71789 |
Target: 5'- -cCGGCCGgCcGGAGAuccgUGCCGacGUGCCc -3' miRNA: 3'- aaGCUGGUgGaCCUCU----ACGGC--CGCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 1142 | 0.66 | 0.688145 |
Target: 5'- -gCGACCAgCUccgcGGGGAgcgcGCCGGCGg- -3' miRNA: 3'- aaGCUGGUgGA----CCUCUa---CGGCCGCgg -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 93272 | 0.66 | 0.708035 |
Target: 5'- -gUGGCgagGCC-GGGGGUGCguCGGCGCCu -3' miRNA: 3'- aaGCUGg--UGGaCCUCUACG--GCCGCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 39526 | 0.66 | 0.688145 |
Target: 5'- --gGGCCAgCUcgcGGucguGGcUGCCGGCGCCc -3' miRNA: 3'- aagCUGGUgGA---CCu---CU-ACGGCCGCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 9507 | 0.66 | 0.699111 |
Target: 5'- cUCGAUgGCCgucaccaugcggccgGGGGAgGCUGGUGCUu -3' miRNA: 3'- aAGCUGgUGGa--------------CCUCUaCGGCCGCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 125905 | 0.66 | 0.71789 |
Target: 5'- -cUGGCCAUUgGGAGcucGUGCCG-CGCCu -3' miRNA: 3'- aaGCUGGUGGaCCUC---UACGGCcGCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 17254 | 0.66 | 0.708035 |
Target: 5'- gUCGGCagCGCCcGGAGcgugGCCuGGCGCa -3' miRNA: 3'- aAGCUG--GUGGaCCUCua--CGG-CCGCGg -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 80652 | 0.66 | 0.688145 |
Target: 5'- gUCGugCccgaacuCCUGGAucUGCgCGGCGCg -3' miRNA: 3'- aAGCugGu------GGACCUcuACG-GCCGCGg -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 111038 | 0.66 | 0.727673 |
Target: 5'- -aCGACCuccCCUGGAgGAUGaCgCGGCGg- -3' miRNA: 3'- aaGCUGGu--GGACCU-CUAC-G-GCCGCgg -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 75902 | 0.66 | 0.698117 |
Target: 5'- -gCGAgCACCccGAGGUgucGCCGGcCGCCa -3' miRNA: 3'- aaGCUgGUGGacCUCUA---CGGCC-GCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 21565 | 0.66 | 0.708035 |
Target: 5'- --gGGCCGCagaGGAucgucuUGCCGGUGCCu -3' miRNA: 3'- aagCUGGUGga-CCUcu----ACGGCCGCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 45719 | 0.66 | 0.708035 |
Target: 5'- -cCGGcCCGCCagcgUGGcgaugaGGAUGUaCGGCGCCa -3' miRNA: 3'- aaGCU-GGUGG----ACC------UCUACG-GCCGCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 55108 | 0.66 | 0.697122 |
Target: 5'- -aCGGCCGagauCgUGGAGGUGCCcucguccGGCGUg -3' miRNA: 3'- aaGCUGGU----GgACCUCUACGG-------CCGCGg -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 24346 | 0.66 | 0.708035 |
Target: 5'- -cUGACCGCgCUGGAGAgcaUGCCcaCGCg -3' miRNA: 3'- aaGCUGGUG-GACCUCU---ACGGccGCGg -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 73441 | 0.66 | 0.715924 |
Target: 5'- aUCGugCGCCaguucuucgcgcGGcGGUGCCGcGUGCCc -3' miRNA: 3'- aAGCugGUGGa-----------CCuCUACGGC-CGCGG- -5' |
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25935 | 5' | -59.7 | NC_005337.1 | + | 58022 | 0.66 | 0.71789 |
Target: 5'- --aGGCgACCUucGGGGAcgGCCGuGCGCUc -3' miRNA: 3'- aagCUGgUGGA--CCUCUa-CGGC-CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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