miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25935 5' -59.7 NC_005337.1 + 93272 0.66 0.708035
Target:  5'- -gUGGCgagGCC-GGGGGUGCguCGGCGCCu -3'
miRNA:   3'- aaGCUGg--UGGaCCUCUACG--GCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 17254 0.66 0.708035
Target:  5'- gUCGGCagCGCCcGGAGcgugGCCuGGCGCa -3'
miRNA:   3'- aAGCUG--GUGGaCCUCua--CGG-CCGCGg -5'
25935 5' -59.7 NC_005337.1 + 128733 0.66 0.708035
Target:  5'- -gCGAgCCGCuCUGGAGcgcGUgacagagcuccGCCGGCGCg -3'
miRNA:   3'- aaGCU-GGUG-GACCUC---UA-----------CGGCCGCGg -5'
25935 5' -59.7 NC_005337.1 + 9507 0.66 0.699111
Target:  5'- cUCGAUgGCCgucaccaugcggccgGGGGAgGCUGGUGCUu -3'
miRNA:   3'- aAGCUGgUGGa--------------CCUCUaCGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 75902 0.66 0.698117
Target:  5'- -gCGAgCACCccGAGGUgucGCCGGcCGCCa -3'
miRNA:   3'- aaGCUgGUGGacCUCUA---CGGCC-GCGG- -5'
25935 5' -59.7 NC_005337.1 + 55108 0.66 0.697122
Target:  5'- -aCGGCCGagauCgUGGAGGUGCCcucguccGGCGUg -3'
miRNA:   3'- aaGCUGGU----GgACCUCUACGG-------CCGCGg -5'
25935 5' -59.7 NC_005337.1 + 80652 0.66 0.688145
Target:  5'- gUCGugCccgaacuCCUGGAucUGCgCGGCGCg -3'
miRNA:   3'- aAGCugGu------GGACCUcuACG-GCCGCGg -5'
25935 5' -59.7 NC_005337.1 + 39526 0.66 0.688145
Target:  5'- --gGGCCAgCUcgcGGucguGGcUGCCGGCGCCc -3'
miRNA:   3'- aagCUGGUgGA---CCu---CU-ACGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 1142 0.66 0.688145
Target:  5'- -gCGACCAgCUccgcGGGGAgcgcGCCGGCGg- -3'
miRNA:   3'- aaGCUGGUgGA----CCUCUa---CGGCCGCgg -5'
25935 5' -59.7 NC_005337.1 + 45923 0.66 0.687145
Target:  5'- uUUgGACCaggaagucgcagaGCCUGGAGAgcgcGCCGgaGCGCa -3'
miRNA:   3'- -AAgCUGG-------------UGGACCUCUa---CGGC--CGCGg -5'
25935 5' -59.7 NC_005337.1 + 28819 0.67 0.678127
Target:  5'- -aCGACCACCcGGAagaaGAUGgCGGCcaGCa -3'
miRNA:   3'- aaGCUGGUGGaCCU----CUACgGCCG--CGg -5'
25935 5' -59.7 NC_005337.1 + 62154 0.67 0.678127
Target:  5'- --gGAUCACgaUGGGGAUGC-GGaCGCCg -3'
miRNA:   3'- aagCUGGUGg-ACCUCUACGgCC-GCGG- -5'
25935 5' -59.7 NC_005337.1 + 121747 0.67 0.678127
Target:  5'- cUCGGCCAgCUcacggugaacccGGAGGucacgcggcugcUGCUGGaCGCCg -3'
miRNA:   3'- aAGCUGGUgGA------------CCUCU------------ACGGCC-GCGG- -5'
25935 5' -59.7 NC_005337.1 + 99282 0.67 0.678127
Target:  5'- -aCGGCCgucuGCCUGGcGcgGCgCGGCGUUc -3'
miRNA:   3'- aaGCUGG----UGGACCuCuaCG-GCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 58287 0.67 0.678127
Target:  5'- -gCGGCCACCUucgccuucgaGGAcGUGCCGGacaaGUCc -3'
miRNA:   3'- aaGCUGGUGGA----------CCUcUACGGCCg---CGG- -5'
25935 5' -59.7 NC_005337.1 + 94732 0.67 0.678127
Target:  5'- -gCGcCCGCC-GGGGc-GCCGGCaGCCa -3'
miRNA:   3'- aaGCuGGUGGaCCUCuaCGGCCG-CGG- -5'
25935 5' -59.7 NC_005337.1 + 38484 0.67 0.677123
Target:  5'- -gCGGCCGCUUccucucgaaGGAGGUgGCCGcccgggcGCGCCu -3'
miRNA:   3'- aaGCUGGUGGA---------CCUCUA-CGGC-------CGCGG- -5'
25935 5' -59.7 NC_005337.1 + 126759 0.67 0.668073
Target:  5'- --gGACCugcucuucagguACCUGGAGA--CCGGCaGCCc -3'
miRNA:   3'- aagCUGG------------UGGACCUCUacGGCCG-CGG- -5'
25935 5' -59.7 NC_005337.1 + 46469 0.67 0.65799
Target:  5'- -gCGACUuCCUGGuGGUGUgGGUgGCCc -3'
miRNA:   3'- aaGCUGGuGGACCuCUACGgCCG-CGG- -5'
25935 5' -59.7 NC_005337.1 + 69055 0.67 0.65799
Target:  5'- -cCGgguACgACCUGGAcgcGGUGcCCGGCGUCc -3'
miRNA:   3'- aaGC---UGgUGGACCU---CUAC-GGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.