miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25935 5' -59.7 NC_005337.1 + 1142 0.66 0.688145
Target:  5'- -gCGACCAgCUccgcGGGGAgcgcGCCGGCGg- -3'
miRNA:   3'- aaGCUGGUgGA----CCUCUa---CGGCCGCgg -5'
25935 5' -59.7 NC_005337.1 + 1414 0.66 0.727673
Target:  5'- -gCGAUCACCacguugcugacgUGGuGuAUGCCGGCGaUCg -3'
miRNA:   3'- aaGCUGGUGG------------ACCuC-UACGGCCGC-GG- -5'
25935 5' -59.7 NC_005337.1 + 4322 0.7 0.452347
Target:  5'- --aGACCACa--GAGggGUCGGCGCCc -3'
miRNA:   3'- aagCUGGUGgacCUCuaCGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 5920 0.66 0.71789
Target:  5'- -gCGAgCGCgagcggGGAGAcGCCGGCGUUg -3'
miRNA:   3'- aaGCUgGUGga----CCUCUaCGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 6607 0.71 0.434408
Target:  5'- gUCGGcgcCCAUCUGGAuGAggcGCCGGCacGCCg -3'
miRNA:   3'- aAGCU---GGUGGACCU-CUa--CGGCCG--CGG- -5'
25935 5' -59.7 NC_005337.1 + 8720 0.72 0.375037
Target:  5'- -gCGuCCGCCccacgucguccuUGGcgcGGAUGUCGGCGCCg -3'
miRNA:   3'- aaGCuGGUGG------------ACC---UCUACGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 9507 0.66 0.699111
Target:  5'- cUCGAUgGCCgucaccaugcggccgGGGGAgGCUGGUGCUu -3'
miRNA:   3'- aAGCUGgUGGa--------------CCUCUaCGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 9995 0.72 0.367015
Target:  5'- cUCGAUUACCUG-----GCCGGCGCCg -3'
miRNA:   3'- aAGCUGGUGGACcucuaCGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 10599 0.69 0.537571
Target:  5'- -cCGGucCCGCCgcgGGGGAgcGgCGGCGCCa -3'
miRNA:   3'- aaGCU--GGUGGa--CCUCUa-CgGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 14997 0.68 0.597342
Target:  5'- -gCG-CaGCUUGGuGA-GCCGGCGCCg -3'
miRNA:   3'- aaGCuGgUGGACCuCUaCGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 15237 0.77 0.18156
Target:  5'- gUCGaACCGguCCUGGcGgcGCCGGCGCCg -3'
miRNA:   3'- aAGC-UGGU--GGACCuCuaCGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 16526 0.7 0.497922
Target:  5'- --aGACCAac-GGAGAgcaggcgUGUCGGCGCCa -3'
miRNA:   3'- aagCUGGUggaCCUCU-------ACGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 17254 0.66 0.708035
Target:  5'- gUCGGCagCGCCcGGAGcgugGCCuGGCGCa -3'
miRNA:   3'- aAGCUG--GUGGaCCUCua--CGG-CCGCGg -5'
25935 5' -59.7 NC_005337.1 + 19690 0.74 0.267386
Target:  5'- -gCGGCCGCgUGGcGuacagcGCCGGCGCCa -3'
miRNA:   3'- aaGCUGGUGgACCuCua----CGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 21565 0.66 0.708035
Target:  5'- --gGGCCGCagaGGAucgucuUGCCGGUGCCu -3'
miRNA:   3'- aagCUGGUGga-CCUcu----ACGGCCGCGG- -5'
25935 5' -59.7 NC_005337.1 + 22397 0.69 0.557309
Target:  5'- cUCGuguACCGCCUGGAGGacgacaccgacaU-CCGGgGCCu -3'
miRNA:   3'- aAGC---UGGUGGACCUCU------------AcGGCCgCGG- -5'
25935 5' -59.7 NC_005337.1 + 22598 0.68 0.586276
Target:  5'- gUCGucGCCGCCgUGGAcccggacuucuucGA-GCCGGCGCg -3'
miRNA:   3'- aAGC--UGGUGG-ACCU-------------CUaCGGCCGCGg -5'
25935 5' -59.7 NC_005337.1 + 23728 0.67 0.65799
Target:  5'- -cUGACCGCCgccgcGGAGcgGCagcagaaGGcCGCCg -3'
miRNA:   3'- aaGCUGGUGGa----CCUCuaCGg------CC-GCGG- -5'
25935 5' -59.7 NC_005337.1 + 24346 0.66 0.708035
Target:  5'- -cUGACCGCgCUGGAGAgcaUGCCcaCGCg -3'
miRNA:   3'- aaGCUGGUG-GACCUCU---ACGGccGCGg -5'
25935 5' -59.7 NC_005337.1 + 25022 0.68 0.574247
Target:  5'- cUUCGACgugcgcgcggcggaCACCgaGGAGcUGCUGcGCGCCg -3'
miRNA:   3'- -AAGCUG--------------GUGGa-CCUCuACGGC-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.