miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25936 5' -59 NC_005337.1 + 6870 0.66 0.78959
Target:  5'- gGUGGUgcaGCAgCGUGCgcccguccaugUCGCGcGCGCgCGg -3'
miRNA:   3'- -CACCA---UGUgGCACG-----------AGCGC-UGCGgGC- -5'
25936 5' -59 NC_005337.1 + 38475 0.66 0.78959
Target:  5'- -cGGUgcGCGCCGgGCgcgCGCGuCGCCg- -3'
miRNA:   3'- caCCA--UGUGGCaCGa--GCGCuGCGGgc -5'
25936 5' -59 NC_005337.1 + 13641 0.66 0.78959
Target:  5'- -aGGgcCACCuccucgaUCGUGACGCCCGu -3'
miRNA:   3'- caCCauGUGGcacg---AGCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 113146 0.66 0.78959
Target:  5'- -cGGUACgugcuguucGCgGUGCgcugCGUGGCGgCCGg -3'
miRNA:   3'- caCCAUG---------UGgCACGa---GCGCUGCgGGC- -5'
25936 5' -59 NC_005337.1 + 54830 0.66 0.787794
Target:  5'- -gGGUACAUgGUGaagaacaugcaCGCG-CGCCCGg -3'
miRNA:   3'- caCCAUGUGgCACga---------GCGCuGCGGGC- -5'
25936 5' -59 NC_005337.1 + 111891 0.66 0.780556
Target:  5'- -cGGUACACgagcuuaagCGUGUUgGCGuucacGCGCCCc -3'
miRNA:   3'- caCCAUGUG---------GCACGAgCGC-----UGCGGGc -5'
25936 5' -59 NC_005337.1 + 84540 0.66 0.780556
Target:  5'- -cGGcGCACCGUG-UC-CGGCGuCCCGc -3'
miRNA:   3'- caCCaUGUGGCACgAGcGCUGC-GGGC- -5'
25936 5' -59 NC_005337.1 + 33086 0.66 0.780556
Target:  5'- -cGGUGC-CCGUGaUCGCGGCGaucaCgCGg -3'
miRNA:   3'- caCCAUGuGGCACgAGCGCUGCg---G-GC- -5'
25936 5' -59 NC_005337.1 + 74159 0.66 0.780556
Target:  5'- -aGGUcacCGCCGUGCU-GCGggaggcGCGCUCGg -3'
miRNA:   3'- caCCAu--GUGGCACGAgCGC------UGCGGGC- -5'
25936 5' -59 NC_005337.1 + 49647 0.66 0.780556
Target:  5'- aUGGagACcuCCGUGagCGUGACGCCCa -3'
miRNA:   3'- cACCa-UGu-GGCACgaGCGCUGCGGGc -5'
25936 5' -59 NC_005337.1 + 95620 0.66 0.780556
Target:  5'- aUGGcgGCGuCCGUGggCGCGG-GCCCGc -3'
miRNA:   3'- cACCa-UGU-GGCACgaGCGCUgCGGGC- -5'
25936 5' -59 NC_005337.1 + 62049 0.66 0.780556
Target:  5'- -aGGcGCGCCcccaCUCGaCGAUGCCCGg -3'
miRNA:   3'- caCCaUGUGGcac-GAGC-GCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 133149 0.66 0.771395
Target:  5'- cUGGUcGCGCgCGUGCU-GCGGCugcuCCCGg -3'
miRNA:   3'- cACCA-UGUG-GCACGAgCGCUGc---GGGC- -5'
25936 5' -59 NC_005337.1 + 68491 0.66 0.771395
Target:  5'- -cGG-GCGCCGcgcUGCUgGCGgccguggguGCGCCCGc -3'
miRNA:   3'- caCCaUGUGGC---ACGAgCGC---------UGCGGGC- -5'
25936 5' -59 NC_005337.1 + 49750 0.66 0.771395
Target:  5'- -cGGUGCGCCgGUGCgUGCGGaacaUGUCCa -3'
miRNA:   3'- caCCAUGUGG-CACGaGCGCU----GCGGGc -5'
25936 5' -59 NC_005337.1 + 133149 0.66 0.771395
Target:  5'- cUGGUcGCGCgCGUGCU-GCGGCugcuCCCGg -3'
miRNA:   3'- cACCA-UGUG-GCACGAgCGCUGc---GGGC- -5'
25936 5' -59 NC_005337.1 + 22016 0.66 0.771395
Target:  5'- -cGGgACAUgGaGCUCGUGuuCGCCCGg -3'
miRNA:   3'- caCCaUGUGgCaCGAGCGCu-GCGGGC- -5'
25936 5' -59 NC_005337.1 + 65703 0.66 0.770472
Target:  5'- uUGGUGCACagccGCaCGCGguggggcGCGCCCGg -3'
miRNA:   3'- cACCAUGUGgca-CGaGCGC-------UGCGGGC- -5'
25936 5' -59 NC_005337.1 + 93485 0.66 0.766769
Target:  5'- gGUGGUGCGCCucggagacgcggaccUGCUCagguucguaacacugGCGACGgCCGu -3'
miRNA:   3'- -CACCAUGUGGc--------------ACGAG---------------CGCUGCgGGC- -5'
25936 5' -59 NC_005337.1 + 132572 0.66 0.762114
Target:  5'- -cGGUG-GCCGUGUcgcugUUGCGACGCgCGc -3'
miRNA:   3'- caCCAUgUGGCACG-----AGCGCUGCGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.