miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25936 5' -59 NC_005337.1 + 733 0.77 0.22628
Target:  5'- -gGGUACGCgG-GCgagagCGCGGCGCCCGc -3'
miRNA:   3'- caCCAUGUGgCaCGa----GCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 733 0.77 0.22628
Target:  5'- -gGGUACGCgG-GCgagagCGCGGCGCCCGc -3'
miRNA:   3'- caCCAUGUGgCaCGa----GCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 1384 0.7 0.56446
Target:  5'- -gGGUACACCGccgagagcguuUGCUCGuCGGCGaucaCCa -3'
miRNA:   3'- caCCAUGUGGC-----------ACGAGC-GCUGCg---GGc -5'
25936 5' -59 NC_005337.1 + 5471 0.68 0.634491
Target:  5'- gGUGGUgcgGCACCGcucgGUgCGC-ACGCCCGu -3'
miRNA:   3'- -CACCA---UGUGGCa---CGaGCGcUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 6436 0.7 0.544767
Target:  5'- uGUGGaGCGgCGUGCggUCGaCGACGCuCCGc -3'
miRNA:   3'- -CACCaUGUgGCACG--AGC-GCUGCG-GGC- -5'
25936 5' -59 NC_005337.1 + 6870 0.66 0.78959
Target:  5'- gGUGGUgcaGCAgCGUGCgcccguccaugUCGCGcGCGCgCGg -3'
miRNA:   3'- -CACCA---UGUgGCACG-----------AGCGC-UGCGgGC- -5'
25936 5' -59 NC_005337.1 + 6986 0.74 0.350314
Target:  5'- -gGGUgACGCCGUGCUUGUccauggcgcgGACGUCCGc -3'
miRNA:   3'- caCCA-UGUGGCACGAGCG----------CUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 11234 0.67 0.733637
Target:  5'- -aGGUGCACCucgGUGCgcaGCccuucGACGUCCGc -3'
miRNA:   3'- caCCAUGUGG---CACGag-CG-----CUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 13641 0.66 0.78959
Target:  5'- -aGGgcCACCuccucgaUCGUGACGCCCGu -3'
miRNA:   3'- caCCauGUGGcacg---AGCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 14705 0.67 0.714212
Target:  5'- -aGGUGCggguACC-UGCUCuccaCGACGCCCa -3'
miRNA:   3'- caCCAUG----UGGcACGAGc---GCUGCGGGc -5'
25936 5' -59 NC_005337.1 + 16030 0.67 0.694517
Target:  5'- -aGGUACA-CGcGCU-GCGGCGCCUGc -3'
miRNA:   3'- caCCAUGUgGCaCGAgCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 19933 0.71 0.459524
Target:  5'- uGUGGUACGCgaUGUGCUCaGCGAagaggcucCGCaCCGg -3'
miRNA:   3'- -CACCAUGUG--GCACGAG-CGCU--------GCG-GGC- -5'
25936 5' -59 NC_005337.1 + 21778 0.67 0.723963
Target:  5'- -aGGUcuucgACGCCGUGCUgCGgGcCGCCUu -3'
miRNA:   3'- caCCA-----UGUGGCACGA-GCgCuGCGGGc -5'
25936 5' -59 NC_005337.1 + 22016 0.66 0.771395
Target:  5'- -cGGgACAUgGaGCUCGUGuuCGCCCGg -3'
miRNA:   3'- caCCaUGUGgCaCGAGCGCu-GCGGGC- -5'
25936 5' -59 NC_005337.1 + 23106 0.68 0.635497
Target:  5'- gGUGGUcagcaacuucaacccCGCCGUGgUCGCGgccauGCGCCCc -3'
miRNA:   3'- -CACCAu--------------GUGGCACgAGCGC-----UGCGGGc -5'
25936 5' -59 NC_005337.1 + 23128 0.69 0.601338
Target:  5'- cUGGUGCGCCGcuucaagcacauccUGCUCuucACGCCCGu -3'
miRNA:   3'- cACCAUGUGGC--------------ACGAGcgcUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 23754 0.69 0.603343
Target:  5'- cUGGUggGCGCCGUGUUcaccacgCGCGAgCGCCaCGu -3'
miRNA:   3'- cACCA--UGUGGCACGA-------GCGCU-GCGG-GC- -5'
25936 5' -59 NC_005337.1 + 25059 0.68 0.624434
Target:  5'- ----cGCGCCGUGCggGCGGCGUUCGu -3'
miRNA:   3'- caccaUGUGGCACGagCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 26410 0.72 0.450481
Target:  5'- -aGGUA---CGUGCUCGCGGCGgCCGc -3'
miRNA:   3'- caCCAUgugGCACGAGCGCUGCgGGC- -5'
25936 5' -59 NC_005337.1 + 28478 0.66 0.752721
Target:  5'- cUGGaGCACgGaUGCggccgCGCGGCGCgCGg -3'
miRNA:   3'- cACCaUGUGgC-ACGa----GCGCUGCGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.