miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25936 5' -59 NC_005337.1 + 5471 0.68 0.634491
Target:  5'- gGUGGUgcgGCACCGcucgGUgCGC-ACGCCCGu -3'
miRNA:   3'- -CACCA---UGUGGCa---CGaGCGcUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 122384 0.71 0.496618
Target:  5'- uGUGcGUGCGCgagguCGUGCUgcgcggcggcgCGCGGCGCCUGu -3'
miRNA:   3'- -CAC-CAUGUG-----GCACGA-----------GCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 88912 0.7 0.515666
Target:  5'- gGUGGUcaACACCGUGCUgaccgucgucUGCGA-GCUCGc -3'
miRNA:   3'- -CACCA--UGUGGCACGA----------GCGCUgCGGGC- -5'
25936 5' -59 NC_005337.1 + 39097 0.7 0.515666
Target:  5'- cGUGGU-CGCCGUggcgcggaaGCUCGCGggcagcguGCGCUCGc -3'
miRNA:   3'- -CACCAuGUGGCA---------CGAGCGC--------UGCGGGC- -5'
25936 5' -59 NC_005337.1 + 96943 0.7 0.544767
Target:  5'- cGUGGUGgACgagGUGCUCGCcGCGCgCGa -3'
miRNA:   3'- -CACCAUgUGg--CACGAGCGcUGCGgGC- -5'
25936 5' -59 NC_005337.1 + 122673 0.69 0.584337
Target:  5'- gGUGGccCGCCGggugugccccUGCUCGCuGcCGCCCGa -3'
miRNA:   3'- -CACCauGUGGC----------ACGAGCG-CuGCGGGC- -5'
25936 5' -59 NC_005337.1 + 23754 0.69 0.603343
Target:  5'- cUGGUggGCGCCGUGUUcaccacgCGCGAgCGCCaCGu -3'
miRNA:   3'- cACCA--UGUGGCACGA-------GCGCU-GCGG-GC- -5'
25936 5' -59 NC_005337.1 + 128119 0.69 0.611371
Target:  5'- gGUGGUGCGCgGcUGC-CGCGugaacgcgcgaaacGCGCUCGg -3'
miRNA:   3'- -CACCAUGUGgC-ACGaGCGC--------------UGCGGGC- -5'
25936 5' -59 NC_005337.1 + 36489 0.69 0.614384
Target:  5'- -cGGccUugGCCGcgGC-CGCGGCGCUCGg -3'
miRNA:   3'- caCC--AugUGGCa-CGaGCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 110839 0.71 0.477894
Target:  5'- -aGGUGCGUgaUGCUCGCG-CGCCCGu -3'
miRNA:   3'- caCCAUGUGgcACGAGCGCuGCGGGC- -5'
25936 5' -59 NC_005337.1 + 59654 0.71 0.477894
Target:  5'- -gGGUGCACCac-CUUGuCGGCGCCCGc -3'
miRNA:   3'- caCCAUGUGGcacGAGC-GCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 19933 0.71 0.459524
Target:  5'- uGUGGUACGCgaUGUGCUCaGCGAagaggcucCGCaCCGg -3'
miRNA:   3'- -CACCAUGUG--GCACGAG-CGCU--------GCG-GGC- -5'
25936 5' -59 NC_005337.1 + 76389 0.78 0.195662
Target:  5'- aGUuGUACACCGUGCgcgcggggCGCuGGCGCCCGu -3'
miRNA:   3'- -CAcCAUGUGGCACGa-------GCG-CUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 59014 0.77 0.210492
Target:  5'- ----aGCGCCGUGCggUCGUGGCGCCCGc -3'
miRNA:   3'- caccaUGUGGCACG--AGCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 733 0.77 0.22628
Target:  5'- -gGGUACGCgG-GCgagagCGCGGCGCCCGc -3'
miRNA:   3'- caCCAUGUGgCaCGa----GCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 6986 0.74 0.350314
Target:  5'- -gGGUgACGCCGUGCUUGUccauggcgcgGACGUCCGc -3'
miRNA:   3'- caCCA-UGUGGCACGAGCG----------CUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 99540 0.73 0.381898
Target:  5'- -cGGUGCGCCGccgacUGCUCGCgcgagGAgGCCCu -3'
miRNA:   3'- caCCAUGUGGC-----ACGAGCG-----CUgCGGGc -5'
25936 5' -59 NC_005337.1 + 69048 0.72 0.423954
Target:  5'- -gGGUACGCCGgguacgaccUGgaCGCGGUGCCCGg -3'
miRNA:   3'- caCCAUGUGGC---------ACgaGCGCUGCGGGC- -5'
25936 5' -59 NC_005337.1 + 126127 0.72 0.423954
Target:  5'- ----cACGCCGUGCgCGCGGCcauGCCCGg -3'
miRNA:   3'- caccaUGUGGCACGaGCGCUG---CGGGC- -5'
25936 5' -59 NC_005337.1 + 26410 0.72 0.450481
Target:  5'- -aGGUA---CGUGCUCGCGGCGgCCGc -3'
miRNA:   3'- caCCAUgugGCACGAGCGCUGCgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.