miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25937 3' -66.2 NC_005337.1 + 56999 0.66 0.4813
Target:  5'- gGCCa-CGGGUUCGuggacacguacuCCCGCCGGCuGGaCGu -3'
miRNA:   3'- -CGGgaGCCUAGGC------------GGGCGGCCG-CC-GC- -5'
25937 3' -66.2 NC_005337.1 + 122689 0.66 0.4813
Target:  5'- uGCCCcugcUCGcugCCGCCCGa-GGUGGUGg -3'
miRNA:   3'- -CGGG----AGCcuaGGCGGGCggCCGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 4880 0.66 0.4813
Target:  5'- uGUCCaugagCGGcUCCGUCUGCUcggagaacgGGCGGUGg -3'
miRNA:   3'- -CGGGa----GCCuAGGCGGGCGG---------CCGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 110332 0.66 0.4813
Target:  5'- gGCCCggccgggCGGcgUCGCgcgcgccugCCGCgGGCGcGCGg -3'
miRNA:   3'- -CGGGa------GCCuaGGCG---------GGCGgCCGC-CGC- -5'
25937 3' -66.2 NC_005337.1 + 56560 0.66 0.4813
Target:  5'- gGCUgUcCGGGUCCcaguucuacuucGCCaUGCUGGUGGCGc -3'
miRNA:   3'- -CGGgA-GCCUAGG------------CGG-GCGGCCGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 50389 0.66 0.4813
Target:  5'- cGCCUggcgCGGGggcgcgCCGCgCGUCGgugacggaGCGGCGg -3'
miRNA:   3'- -CGGGa---GCCUa-----GGCGgGCGGC--------CGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 1625 0.66 0.472507
Target:  5'- uUCCUCGaucggaggucGAUgCGCgCGCCcGCGGCGa -3'
miRNA:   3'- cGGGAGC----------CUAgGCGgGCGGcCGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 84061 0.66 0.472507
Target:  5'- cGCCCUCGGGgagg--CGCagGGCGGCGg -3'
miRNA:   3'- -CGGGAGCCUaggcggGCGg-CCGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 20335 0.66 0.472507
Target:  5'- uGCCUUCuug-CUGCauCCGCUGGCGGUGc -3'
miRNA:   3'- -CGGGAGccuaGGCG--GGCGGCCGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 9398 0.66 0.472507
Target:  5'- gGUCCUCGGA---GgCCGuaGGCGGCa -3'
miRNA:   3'- -CGGGAGCCUaggCgGGCggCCGCCGc -5'
25937 3' -66.2 NC_005337.1 + 5741 0.66 0.472507
Target:  5'- cGCgCUCGGGcUCUGgCa--CGGCGGCGg -3'
miRNA:   3'- -CGgGAGCCU-AGGCgGgcgGCCGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 132510 0.66 0.469885
Target:  5'- gGCCggCGGGaugCCGCCCuggucgguccugcuGUCGGUGGCc -3'
miRNA:   3'- -CGGgaGCCUa--GGCGGG--------------CGGCCGCCGc -5'
25937 3' -66.2 NC_005337.1 + 98460 0.66 0.467271
Target:  5'- gGCCUgCGGcAUgCgugcgcaaggcagggGCgCGCCGGCGGCGu -3'
miRNA:   3'- -CGGGaGCC-UAgG---------------CGgGCGGCCGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 98704 0.66 0.463797
Target:  5'- cGCCUcgcuaGGcAUCCGCUCGCgCGGCGcccuGCGc -3'
miRNA:   3'- -CGGGag---CC-UAGGCGGGCG-GCCGC----CGC- -5'
25937 3' -66.2 NC_005337.1 + 60050 0.66 0.463797
Target:  5'- cGCCCUCccgaucAUCCGCCgcaaGCaCGGCGGa- -3'
miRNA:   3'- -CGGGAGcc----UAGGCGGg---CG-GCCGCCgc -5'
25937 3' -66.2 NC_005337.1 + 80486 0.66 0.463797
Target:  5'- aGCacguaCUC-GAUgCGCCCcgcgGCCGGgGGCGg -3'
miRNA:   3'- -CGg----GAGcCUAgGCGGG----CGGCCgCCGC- -5'
25937 3' -66.2 NC_005337.1 + 23042 0.66 0.463797
Target:  5'- uGUCCUCGuucguGAcgcacgCCGCgCGCCGgaacGCGGCGg -3'
miRNA:   3'- -CGGGAGC-----CUa-----GGCGgGCGGC----CGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 4547 0.66 0.458611
Target:  5'- aGCCCagUCGGAugagcucccgcaugaUCUGCugCCGCgGGCgcGGCGa -3'
miRNA:   3'- -CGGG--AGCCU---------------AGGCG--GGCGgCCG--CCGC- -5'
25937 3' -66.2 NC_005337.1 + 77399 0.66 0.455171
Target:  5'- cGCCa--GGAUCuucguCGCCaugCGCUGGCGGUGc -3'
miRNA:   3'- -CGGgagCCUAG-----GCGG---GCGGCCGCCGC- -5'
25937 3' -66.2 NC_005337.1 + 118797 0.66 0.455171
Target:  5'- cGCCgUCGug-CCGCgcgcgCCGUCGGUGGCc -3'
miRNA:   3'- -CGGgAGCcuaGGCG-----GGCGGCCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.