miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25938 5' -47.7 NC_005337.1 + 83021 0.66 0.99956
Target:  5'- cUCGGUGACGCc-GUACAcGGCG--GACa -3'
miRNA:   3'- -GGUCACUGCGauCAUGU-UCGUgaUUG- -5'
25938 5' -47.7 NC_005337.1 + 96092 0.66 0.99956
Target:  5'- aCGGUGACGC-AGUugGgaaacagcAGCAUUuccGGCa -3'
miRNA:   3'- gGUCACUGCGaUCAugU--------UCGUGA---UUG- -5'
25938 5' -47.7 NC_005337.1 + 38932 0.66 0.99956
Target:  5'- cCCGGUGuCGC-AGcgccACGGcGCGCUAACc -3'
miRNA:   3'- -GGUCACuGCGaUCa---UGUU-CGUGAUUG- -5'
25938 5' -47.7 NC_005337.1 + 119139 0.66 0.99956
Target:  5'- ---aUGuACGCUGGUACuggGGCauGCUAGCa -3'
miRNA:   3'- ggucAC-UGCGAUCAUGu--UCG--UGAUUG- -5'
25938 5' -47.7 NC_005337.1 + 69063 0.66 0.999448
Target:  5'- gCCAGcGugGCcagcggcgGGUGCAcgAGCACgAGCu -3'
miRNA:   3'- -GGUCaCugCGa-------UCAUGU--UCGUGaUUG- -5'
25938 5' -47.7 NC_005337.1 + 22502 0.66 0.999448
Target:  5'- -gAGUGGCGCcAGUACuucguccGGCugUAccGCg -3'
miRNA:   3'- ggUCACUGCGaUCAUGu------UCGugAU--UG- -5'
25938 5' -47.7 NC_005337.1 + 55790 0.66 0.999448
Target:  5'- uCCGGgagcgcgaccUGACGCUGG-ACGAgGUGCUGAa -3'
miRNA:   3'- -GGUC----------ACUGCGAUCaUGUU-CGUGAUUg -5'
25938 5' -47.7 NC_005337.1 + 132187 0.66 0.999448
Target:  5'- gCGcUGGCGCUGGcguCGAGCGCgcucgcgGACa -3'
miRNA:   3'- gGUcACUGCGAUCau-GUUCGUGa------UUG- -5'
25938 5' -47.7 NC_005337.1 + 48408 0.66 0.999448
Target:  5'- aCGGaGACGCUcggcGUACuGGCGCUGuGCg -3'
miRNA:   3'- gGUCaCUGCGAu---CAUGuUCGUGAU-UG- -5'
25938 5' -47.7 NC_005337.1 + 116701 0.66 0.999312
Target:  5'- gCCGGccgcaaUGGCGC-GGcACAAGCACUccGACc -3'
miRNA:   3'- -GGUC------ACUGCGaUCaUGUUCGUGA--UUG- -5'
25938 5' -47.7 NC_005337.1 + 15469 0.66 0.999312
Target:  5'- gUCAGUGACGUgguuugUGGU-CGucGGCGCUGcuGCg -3'
miRNA:   3'- -GGUCACUGCG------AUCAuGU--UCGUGAU--UG- -5'
25938 5' -47.7 NC_005337.1 + 84582 0.66 0.999312
Target:  5'- cCCGG-GGCGCUGGUgugggugaccACGAGCGa---- -3'
miRNA:   3'- -GGUCaCUGCGAUCA----------UGUUCGUgauug -5'
25938 5' -47.7 NC_005337.1 + 40923 0.66 0.999312
Target:  5'- cCCGGUGGCGCUGc-GCGuccuGCGCg--- -3'
miRNA:   3'- -GGUCACUGCGAUcaUGUu---CGUGauug -5'
25938 5' -47.7 NC_005337.1 + 80451 0.66 0.999297
Target:  5'- gCCGGUccgaggaGACGCU-GUugAAGUACUucgggAGCa -3'
miRNA:   3'- -GGUCA-------CUGCGAuCAugUUCGUGA-----UUG- -5'
25938 5' -47.7 NC_005337.1 + 48427 0.66 0.999148
Target:  5'- -uGGcgGACGCggacGUGCuGGCGCUGAUg -3'
miRNA:   3'- ggUCa-CUGCGau--CAUGuUCGUGAUUG- -5'
25938 5' -47.7 NC_005337.1 + 65532 0.66 0.999148
Target:  5'- gCCGGUGcuggagGCGCacuGUGCGcAGCACgGGCg -3'
miRNA:   3'- -GGUCAC------UGCGau-CAUGU-UCGUGaUUG- -5'
25938 5' -47.7 NC_005337.1 + 127791 0.66 0.999148
Target:  5'- -uGGUGcgggUGCUGGUggACGccGGCGCUGACg -3'
miRNA:   3'- ggUCACu---GCGAUCA--UGU--UCGUGAUUG- -5'
25938 5' -47.7 NC_005337.1 + 74563 0.66 0.998951
Target:  5'- --cGUGAUGCUGGccGCGcGGCACgcgGACg -3'
miRNA:   3'- gguCACUGCGAUCa-UGU-UCGUGa--UUG- -5'
25938 5' -47.7 NC_005337.1 + 23120 0.66 0.998951
Target:  5'- uCCg--GACGCUGGUGCGccgcuucaAGCACa--- -3'
miRNA:   3'- -GGucaCUGCGAUCAUGU--------UCGUGauug -5'
25938 5' -47.7 NC_005337.1 + 115205 0.66 0.998951
Target:  5'- aCGGUGcCGCU---GCGGGCGCUGc- -3'
miRNA:   3'- gGUCACuGCGAucaUGUUCGUGAUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.