miRNA display CGI


Results 21 - 40 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25939 5' -48.3 NC_005337.1 + 29039 0.66 0.999174
Target:  5'- gGUggUGGGG-GCGC------CACGCCg -3'
miRNA:   3'- -CGuuGCCCCaUGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 57267 0.66 0.999102
Target:  5'- gGCA-CGGGGccGCGCggggccggCGCGCg -3'
miRNA:   3'- -CGUuGCCCCa-UGCGaaaaaa--GUGCGg -5'
25939 5' -48.3 NC_005337.1 + 132761 0.66 0.998985
Target:  5'- aGUGGCGGac-GCGCUggcg-CGCGCCg -3'
miRNA:   3'- -CGUUGCCccaUGCGAaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 60880 0.66 0.998985
Target:  5'- aGCuGCGGGuGcggGCGCgccgagUACGCCu -3'
miRNA:   3'- -CGuUGCCC-Ca--UGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 62768 0.66 0.998985
Target:  5'- cGCGGCGGuGGaACGCgaag-UCGgGCa -3'
miRNA:   3'- -CGUUGCC-CCaUGCGaaaaaAGUgCGg -5'
25939 5' -48.3 NC_005337.1 + 68507 0.66 0.998985
Target:  5'- gGCGGcCGuGGGUGCGCc-----CGCGCUc -3'
miRNA:   3'- -CGUU-GC-CCCAUGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 82975 0.66 0.998985
Target:  5'- cCAGC-GGGUGCGag-UUgcucacgcUCACGCCg -3'
miRNA:   3'- cGUUGcCCCAUGCgaaAAa-------AGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 128277 0.66 0.998985
Target:  5'- uGCAcGCGGcGGUcugcaACGCg-----CGCGCCu -3'
miRNA:   3'- -CGU-UGCC-CCA-----UGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 107004 0.66 0.998985
Target:  5'- -aGGCGGGcGcagagACGCgg--UUCACGCUc -3'
miRNA:   3'- cgUUGCCC-Ca----UGCGaaaaAAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 34492 0.66 0.998965
Target:  5'- cGCGAUGcGGGUAacccaugcacuCGCaggccauUUUUaUCGCGCCc -3'
miRNA:   3'- -CGUUGC-CCCAU-----------GCG-------AAAAaAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 111166 0.66 0.998943
Target:  5'- aCGGCGGGGUugaaguUGCUgaccaccgCGCGCa -3'
miRNA:   3'- cGUUGCCCCAu-----GCGAaaaaa---GUGCGg -5'
25939 5' -48.3 NC_005337.1 + 5554 0.66 0.998761
Target:  5'- aGCAGCGGcucgcGGUACaCg-----CGCGCCa -3'
miRNA:   3'- -CGUUGCC-----CCAUGcGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 33242 0.66 0.998761
Target:  5'- cGCAgaaACGGGcccACGCgaguc-CACGCCa -3'
miRNA:   3'- -CGU---UGCCCca-UGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 679 0.67 0.998581
Target:  5'- aGCAGCGGGcccuUGCGCgcggaggcgaagcUCGCGCg -3'
miRNA:   3'- -CGUUGCCCc---AUGCGaaaaa--------AGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 679 0.67 0.998581
Target:  5'- aGCAGCGGGcccuUGCGCgcggaggcgaagcUCGCGCg -3'
miRNA:   3'- -CGUUGCCCc---AUGCGaaaaa--------AGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 110864 0.67 0.998497
Target:  5'- -uGACGGGGaUGUGCUUguacgUCugGCa -3'
miRNA:   3'- cgUUGCCCC-AUGCGAAaaa--AGugCGg -5'
25939 5' -48.3 NC_005337.1 + 103991 0.67 0.998497
Target:  5'- uCAACGGcguGGUGCGCcuga---ACGCCu -3'
miRNA:   3'- cGUUGCC---CCAUGCGaaaaaagUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 105707 0.67 0.998186
Target:  5'- cGCAGCGcccgucGUACGUgagucggUCGCGCCu -3'
miRNA:   3'- -CGUUGCcc----CAUGCGaaaaa--AGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 77162 0.67 0.998186
Target:  5'- gGCGaccACGGGGUACuGCcg-----GCGCCa -3'
miRNA:   3'- -CGU---UGCCCCAUG-CGaaaaaagUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 89833 0.67 0.998186
Target:  5'- cGCAGCaGGuGGcGCGCU----UCACgGCCu -3'
miRNA:   3'- -CGUUG-CC-CCaUGCGAaaaaAGUG-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.