miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25940 5' -55.4 NC_005337.1 + 40044 0.66 0.932961
Target:  5'- cGUCGUCGcgguGCgCCGAaccggGGACcggUACCgCGCGg -3'
miRNA:   3'- -CAGCAGC----UG-GGCUa----UCUG---AUGG-GCGC- -5'
25940 5' -55.4 NC_005337.1 + 33870 0.66 0.927806
Target:  5'- -gCGUCGAUCUcGUAGcGCgcGCCCGCGc -3'
miRNA:   3'- caGCAGCUGGGcUAUC-UGa-UGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 95057 0.66 0.916779
Target:  5'- cGUUGUCGcgcacGCCCGGguccgGGuccGCguaGCCCGCGg -3'
miRNA:   3'- -CAGCAGC-----UGGGCUa----UC---UGa--UGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 101659 0.66 0.916779
Target:  5'- cGUCGcccuuugCGACaCCGAagAGAagACCCGCGa -3'
miRNA:   3'- -CAGCa------GCUG-GGCUa-UCUgaUGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 112932 0.66 0.910908
Target:  5'- cGUCGUCGACCUccggagGAUAucCUuuacCCCGUGa -3'
miRNA:   3'- -CAGCAGCUGGG------CUAUcuGAu---GGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 47548 0.66 0.910908
Target:  5'- cUCGUgGGCCUGAUGccgcGACUGaccaCCGCc -3'
miRNA:   3'- cAGCAgCUGGGCUAU----CUGAUg---GGCGc -5'
25940 5' -55.4 NC_005337.1 + 38695 0.66 0.910908
Target:  5'- -cCGgcCGACCCc--GGACUGCCCGUc -3'
miRNA:   3'- caGCa-GCUGGGcuaUCUGAUGGGCGc -5'
25940 5' -55.4 NC_005337.1 + 49596 0.66 0.904802
Target:  5'- aUCGgCGACCaguGggAGGC-GCCCGCGg -3'
miRNA:   3'- cAGCaGCUGGg--CuaUCUGaUGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 94045 0.66 0.904802
Target:  5'- uGUCGUCGAacgacgagguUCCGGgaacGGGCUGgucCCUGCGg -3'
miRNA:   3'- -CAGCAGCU----------GGGCUa---UCUGAU---GGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 55176 0.67 0.898461
Target:  5'- cGUCGacgaCGugCCGGUGGGCaUGCgCGUGu -3'
miRNA:   3'- -CAGCa---GCugGGCUAUCUG-AUGgGCGC- -5'
25940 5' -55.4 NC_005337.1 + 77528 0.67 0.898461
Target:  5'- gGUCGUCGAgCCCGGgaucuucgcgUAG-UUGgCCGCGu -3'
miRNA:   3'- -CAGCAGCU-GGGCU----------AUCuGAUgGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 78034 0.67 0.898461
Target:  5'- cUCGUCGGCCgGcgacAUGGGCacgAUCCGCc -3'
miRNA:   3'- cAGCAGCUGGgC----UAUCUGa--UGGGCGc -5'
25940 5' -55.4 NC_005337.1 + 92164 0.67 0.89189
Target:  5'- cGUCcUCGuCUCGAUGGACU-CCCGg- -3'
miRNA:   3'- -CAGcAGCuGGGCUAUCUGAuGGGCgc -5'
25940 5' -55.4 NC_005337.1 + 103958 0.67 0.89189
Target:  5'- gGUCGUCGAUCUGGUGGagaagggggaGgUGCCgGCc -3'
miRNA:   3'- -CAGCAGCUGGGCUAUC----------UgAUGGgCGc -5'
25940 5' -55.4 NC_005337.1 + 132067 0.67 0.870827
Target:  5'- cUCG-CGGCCCGGgccGC-GCCCGCGu -3'
miRNA:   3'- cAGCaGCUGGGCUaucUGaUGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 59296 0.67 0.870091
Target:  5'- cGUgGUCGACCCGGcc-GCUAUcgcguagCCGCGg -3'
miRNA:   3'- -CAgCAGCUGGGCUaucUGAUG-------GGCGC- -5'
25940 5' -55.4 NC_005337.1 + 117480 0.67 0.867871
Target:  5'- -cCGcCGACgcgcacaacgagaCGAUAGACUGCCUGCu -3'
miRNA:   3'- caGCaGCUGg------------GCUAUCUGAUGGGCGc -5'
25940 5' -55.4 NC_005337.1 + 51000 0.68 0.86638
Target:  5'- cGUCGUCGGCCCGGcccucgagccgccagUcAGGCU-CCgGCu -3'
miRNA:   3'- -CAGCAGCUGGGCU---------------A-UCUGAuGGgCGc -5'
25940 5' -55.4 NC_005337.1 + 6392 0.68 0.863372
Target:  5'- cGUCGugaUCGucCCCGGgugcgUGGACaUGCCCGUGa -3'
miRNA:   3'- -CAGC---AGCu-GGGCU-----AUCUG-AUGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 29581 0.68 0.858799
Target:  5'- cUCGUUGGCCUGccGGAUgagcuuggucuugcGCCCGCGg -3'
miRNA:   3'- cAGCAGCUGGGCuaUCUGa-------------UGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.