Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25940 | 5' | -55.4 | NC_005337.1 | + | 117583 | 1.08 | 0.003817 |
Target: 5'- cGUCGUCGACCCGAUAGACUACCCGCGc -3' miRNA: 3'- -CAGCAGCUGGGCUAUCUGAUGGGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 76464 | 0.77 | 0.366274 |
Target: 5'- cGUCGaUGACCacgcaGAUGcGGCUGCCCGCGg -3' miRNA: 3'- -CAGCaGCUGGg----CUAU-CUGAUGGGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 131899 | 0.73 | 0.558582 |
Target: 5'- uGUCGUCGAcgcaCCCGAUAGAgcACCuggCGCGg -3' miRNA: 3'- -CAGCAGCU----GGGCUAUCUgaUGG---GCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 99532 | 0.73 | 0.577733 |
Target: 5'- -aCG-CGGCCCGGUGcgccgccGACUGCUCGCGc -3' miRNA: 3'- caGCaGCUGGGCUAU-------CUGAUGGGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 98560 | 0.71 | 0.670531 |
Target: 5'- -cCGUCcacGCaCCGGUAGACggaGCCCGCGc -3' miRNA: 3'- caGCAGc--UG-GGCUAUCUGa--UGGGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 71167 | 0.71 | 0.700858 |
Target: 5'- uGUCGUCGcuggGCUCGGUGGcACgggGCCCGuCGa -3' miRNA: 3'- -CAGCAGC----UGGGCUAUC-UGa--UGGGC-GC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 94847 | 0.71 | 0.710863 |
Target: 5'- -gCG-CGGCCCGAgcGGGC-GCCCGCGc -3' miRNA: 3'- caGCaGCUGGGCUa-UCUGaUGGGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 36787 | 0.71 | 0.710863 |
Target: 5'- cUCGUgCGACCCGcUGGGCgucAgCCGCGu -3' miRNA: 3'- cAGCA-GCUGGGCuAUCUGa--UgGGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 117677 | 0.7 | 0.720802 |
Target: 5'- uUCGUCGACCUGAgcgUGGACaGCUacUGCGu -3' miRNA: 3'- cAGCAGCUGGGCU---AUCUGaUGG--GCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 50544 | 0.7 | 0.720802 |
Target: 5'- -cUGUgGACCCGGUAGGguucuugaacuuCUugCCGCGc -3' miRNA: 3'- caGCAgCUGGGCUAUCU------------GAugGGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 130459 | 0.69 | 0.787732 |
Target: 5'- cUCGUCGACCUGGUgcugagcaAGG-UGCCCGUc -3' miRNA: 3'- cAGCAGCUGGGCUA--------UCUgAUGGGCGc -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 18773 | 0.69 | 0.787732 |
Target: 5'- gGUCGUCGACCuCGcgAGGCcggcgcACCuCGUGg -3' miRNA: 3'- -CAGCAGCUGG-GCuaUCUGa-----UGG-GCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 98328 | 0.69 | 0.805732 |
Target: 5'- -gCGUCccuACCCGGU--GCUGCCUGCGa -3' miRNA: 3'- caGCAGc--UGGGCUAucUGAUGGGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 122041 | 0.68 | 0.823104 |
Target: 5'- -cCGUCgGugCCGAgugccgcgucgUGGagacGCUGCCCGCGg -3' miRNA: 3'- caGCAG-CugGGCU-----------AUC----UGAUGGGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 133445 | 0.68 | 0.829863 |
Target: 5'- uUCGUCGAgCCCGGgcccgcgcgcgcGGACgGCuCCGCGg -3' miRNA: 3'- cAGCAGCU-GGGCUa-----------UCUGaUG-GGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 133445 | 0.68 | 0.829863 |
Target: 5'- uUCGUCGAgCCCGGgcccgcgcgcgcGGACgGCuCCGCGg -3' miRNA: 3'- cAGCAGCU-GGGCUa-----------UCUGaUG-GGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 25084 | 0.68 | 0.839783 |
Target: 5'- cUCGcCGAUCuCGAUGGACU--CCGCGu -3' miRNA: 3'- cAGCaGCUGG-GCUAUCUGAugGGCGC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 36019 | 0.68 | 0.847844 |
Target: 5'- cGUCGUgGACggCGAcacGGACUGCCCGaCGu -3' miRNA: 3'- -CAGCAgCUGg-GCUa--UCUGAUGGGC-GC- -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 73359 | 0.68 | 0.847844 |
Target: 5'- -gCGUCGcguGCCCGAccguGGCcgUGCCCGCa -3' miRNA: 3'- caGCAGC---UGGGCUau--CUG--AUGGGCGc -5' |
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25940 | 5' | -55.4 | NC_005337.1 | + | 42375 | 0.68 | 0.855709 |
Target: 5'- cGUCGUgaccggCGACCCGG-AGGCg--CCGCGg -3' miRNA: 3'- -CAGCA------GCUGGGCUaUCUGaugGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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