miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25940 5' -55.4 NC_005337.1 + 95057 0.66 0.916779
Target:  5'- cGUUGUCGcgcacGCCCGGguccgGGuccGCguaGCCCGCGg -3'
miRNA:   3'- -CAGCAGC-----UGGGCUa----UC---UGa--UGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 133445 0.68 0.829863
Target:  5'- uUCGUCGAgCCCGGgcccgcgcgcgcGGACgGCuCCGCGg -3'
miRNA:   3'- cAGCAGCU-GGGCUa-----------UCUGaUG-GGCGC- -5'
25940 5' -55.4 NC_005337.1 + 25084 0.68 0.839783
Target:  5'- cUCGcCGAUCuCGAUGGACU--CCGCGu -3'
miRNA:   3'- cAGCaGCUGG-GCUAUCUGAugGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 42375 0.68 0.855709
Target:  5'- cGUCGUgaccggCGACCCGG-AGGCg--CCGCGg -3'
miRNA:   3'- -CAGCA------GCUGGGCUaUCUGaugGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 117480 0.67 0.867871
Target:  5'- -cCGcCGACgcgcacaacgagaCGAUAGACUGCCUGCu -3'
miRNA:   3'- caGCaGCUGg------------GCUAUCUGAUGGGCGc -5'
25940 5' -55.4 NC_005337.1 + 132067 0.67 0.870827
Target:  5'- cUCG-CGGCCCGGgccGC-GCCCGCGu -3'
miRNA:   3'- cAGCaGCUGGGCUaucUGaUGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 94045 0.66 0.904802
Target:  5'- uGUCGUCGAacgacgagguUCCGGgaacGGGCUGgucCCUGCGg -3'
miRNA:   3'- -CAGCAGCU----------GGGCUa---UCUGAU---GGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 47548 0.66 0.910908
Target:  5'- cUCGUgGGCCUGAUGccgcGACUGaccaCCGCc -3'
miRNA:   3'- cAGCAgCUGGGCUAU----CUGAUg---GGCGc -5'
25940 5' -55.4 NC_005337.1 + 112932 0.66 0.910908
Target:  5'- cGUCGUCGACCUccggagGAUAucCUuuacCCCGUGa -3'
miRNA:   3'- -CAGCAGCUGGG------CUAUcuGAu---GGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 98328 0.69 0.805732
Target:  5'- -gCGUCccuACCCGGU--GCUGCCUGCGa -3'
miRNA:   3'- caGCAGc--UGGGCUAucUGAUGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 130459 0.69 0.787732
Target:  5'- cUCGUCGACCUGGUgcugagcaAGG-UGCCCGUc -3'
miRNA:   3'- cAGCAGCUGGGCUA--------UCUgAUGGGCGc -5'
25940 5' -55.4 NC_005337.1 + 18773 0.69 0.787732
Target:  5'- gGUCGUCGACCuCGcgAGGCcggcgcACCuCGUGg -3'
miRNA:   3'- -CAGCAGCUGG-GCuaUCUGa-----UGG-GCGC- -5'
25940 5' -55.4 NC_005337.1 + 76464 0.77 0.366274
Target:  5'- cGUCGaUGACCacgcaGAUGcGGCUGCCCGCGg -3'
miRNA:   3'- -CAGCaGCUGGg----CUAU-CUGAUGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 131899 0.73 0.558582
Target:  5'- uGUCGUCGAcgcaCCCGAUAGAgcACCuggCGCGg -3'
miRNA:   3'- -CAGCAGCU----GGGCUAUCUgaUGG---GCGC- -5'
25940 5' -55.4 NC_005337.1 + 99532 0.73 0.577733
Target:  5'- -aCG-CGGCCCGGUGcgccgccGACUGCUCGCGc -3'
miRNA:   3'- caGCaGCUGGGCUAU-------CUGAUGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 98560 0.71 0.670531
Target:  5'- -cCGUCcacGCaCCGGUAGACggaGCCCGCGc -3'
miRNA:   3'- caGCAGc--UG-GGCUAUCUGa--UGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 36787 0.71 0.710863
Target:  5'- cUCGUgCGACCCGcUGGGCgucAgCCGCGu -3'
miRNA:   3'- cAGCA-GCUGGGCuAUCUGa--UgGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 94847 0.71 0.710863
Target:  5'- -gCG-CGGCCCGAgcGGGC-GCCCGCGc -3'
miRNA:   3'- caGCaGCUGGGCUa-UCUGaUGGGCGC- -5'
25940 5' -55.4 NC_005337.1 + 117677 0.7 0.720802
Target:  5'- uUCGUCGACCUGAgcgUGGACaGCUacUGCGu -3'
miRNA:   3'- cAGCAGCUGGGCU---AUCUGaUGG--GCGC- -5'
25940 5' -55.4 NC_005337.1 + 50544 0.7 0.720802
Target:  5'- -cUGUgGACCCGGUAGGguucuugaacuuCUugCCGCGc -3'
miRNA:   3'- caGCAgCUGGGCUAUCU------------GAugGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.