miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25941 3' -50.4 NC_005337.1 + 109175 0.66 0.989699
Target:  5'- --cGCGCCGCgccGC----GCGGGCGg -3'
miRNA:   3'- cuuUGCGGCGauuUGaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 1170 0.66 0.989137
Target:  5'- cGGAGCGgcCCGCUAGGCggugcgcgagcgCggcACGGGCGc -3'
miRNA:   3'- -CUUUGC--GGCGAUUUGaa----------Ga--UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 130675 0.66 0.994156
Target:  5'- --uACGgCGCUAcGCcgCUGgGGGCGc -3'
miRNA:   3'- cuuUGCgGCGAUuUGaaGAUgCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 11638 0.66 0.993224
Target:  5'- aGAAGC-CCag-GAACUUCU-CGGGCGc -3'
miRNA:   3'- -CUUUGcGGcgaUUUGAAGAuGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 127625 0.66 0.994156
Target:  5'- --cACGCCGCUGGAuCUUCUGCu---- -3'
miRNA:   3'- cuuUGCGGCGAUUU-GAAGAUGcccgc -5'
25941 3' -50.4 NC_005337.1 + 18656 0.66 0.989699
Target:  5'- --cGCGCCGCc--GCcg--GCGGGCGg -3'
miRNA:   3'- cuuUGCGGCGauuUGaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 122289 0.66 0.991005
Target:  5'- cGGGACGCgGagGAGCUccgCgagGCGGGCGu -3'
miRNA:   3'- -CUUUGCGgCgaUUUGAa--Ga--UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 123735 0.67 0.980824
Target:  5'- cAGACGCUGCUGGACaUCUgaACGuguguuacgucGGCGu -3'
miRNA:   3'- cUUUGCGGCGAUUUGaAGA--UGC-----------CCGC- -5'
25941 3' -50.4 NC_005337.1 + 77400 0.67 0.98825
Target:  5'- -cGGCGCCGCgggAggUggaUgUGCGGGCc -3'
miRNA:   3'- cuUUGCGGCGa--UuuGa--AgAUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 96558 0.67 0.980602
Target:  5'- cAGAUGCCGCUGcaggugGACgacCUcacgcgcGCGGGCGu -3'
miRNA:   3'- cUUUGCGGCGAU------UUGaa-GA-------UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 34193 0.67 0.980824
Target:  5'- --cGCGCCGC-GGACUUCUuuuucugcauguGCcGGCGg -3'
miRNA:   3'- cuuUGCGGCGaUUUGAAGA------------UGcCCGC- -5'
25941 3' -50.4 NC_005337.1 + 28972 0.67 0.984882
Target:  5'- uGggGCGUgCGC--AGCgaCUGCGGGCa -3'
miRNA:   3'- -CuuUGCG-GCGauUUGaaGAUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 115217 0.67 0.984882
Target:  5'- cGGGCGCUGCUGAAg----AUGGGCGc -3'
miRNA:   3'- cUUUGCGGCGAUUUgaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 107566 0.67 0.983146
Target:  5'- -cAACGCCGCggu-CUUCgcccgcgugcuguccACGGGCa -3'
miRNA:   3'- cuUUGCGGCGauuuGAAGa--------------UGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 75124 0.67 0.984882
Target:  5'- aGGAACGUCGUgGGGCUguaccgC-ACGGGCa -3'
miRNA:   3'- -CUUUGCGGCGaUUUGAa-----GaUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 118868 0.67 0.984882
Target:  5'- ----gGCUGCUGGccauguacaaccACUUC-ACGGGCGu -3'
miRNA:   3'- cuuugCGGCGAUU------------UGAAGaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 66315 0.67 0.984882
Target:  5'- uGAGCGCCGCgg----UC-GCGGGCu -3'
miRNA:   3'- cUUUGCGGCGauuugaAGaUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 108300 0.67 0.984882
Target:  5'- --cAUGCUGCUGcGCUcCUuccuggacgcGCGGGCGa -3'
miRNA:   3'- cuuUGCGGCGAUuUGAaGA----------UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 55805 0.67 0.980377
Target:  5'- -uGACGCUggacgagguGCUGAACcugcucgggcgCUACGGGCGc -3'
miRNA:   3'- cuUUGCGG---------CGAUUUGaa---------GAUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 29210 0.67 0.980824
Target:  5'- gGAGGCGCUGCgcAGCgccgcgCggcCGGGCGu -3'
miRNA:   3'- -CUUUGCGGCGauUUGaa----Gau-GCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.