miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25941 3' -50.4 NC_005337.1 + 117763 1.07 0.011449
Target:  5'- cGAACGCCGCUAAACUUCUACGGGCGg -3'
miRNA:   3'- cUUUGCGGCGAUUUGAAGAUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 43362 0.82 0.374589
Target:  5'- aAGACGCCGCUGcgcguguGCUUCUAccccCGGGCGg -3'
miRNA:   3'- cUUUGCGGCGAUu------UGAAGAU----GCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 96343 0.78 0.537432
Target:  5'- -cGGCGCUGCUGGACUUCgcgaaGCGGGgGc -3'
miRNA:   3'- cuUUGCGGCGAUUUGAAGa----UGCCCgC- -5'
25941 3' -50.4 NC_005337.1 + 54083 0.78 0.579563
Target:  5'- cGAGACGCgcgaGCUGGACggcgUgUACGGGCGc -3'
miRNA:   3'- -CUUUGCGg---CGAUUUGa---AgAUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 19783 0.78 0.558385
Target:  5'- -cGACGCCGCUGGACUcggcgucgUCguaGGGCGg -3'
miRNA:   3'- cuUUGCGGCGAUUUGA--------AGaugCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 105212 0.78 0.547877
Target:  5'- uGGGgGCCGCUGAGCUgcgcgCUcGCGGGCGc -3'
miRNA:   3'- cUUUgCGGCGAUUUGAa----GA-UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 103542 0.78 0.536392
Target:  5'- aGGAGCGCgCGCUGuacGACUUCUGCGacuucccGGCGg -3'
miRNA:   3'- -CUUUGCG-GCGAU---UUGAAGAUGC-------CCGC- -5'
25941 3' -50.4 NC_005337.1 + 108521 0.76 0.675941
Target:  5'- uGGAGCGCaCGCUGGACggCgcgACGGuGCGg -3'
miRNA:   3'- -CUUUGCG-GCGAUUUGaaGa--UGCC-CGC- -5'
25941 3' -50.4 NC_005337.1 + 126924 0.76 0.665262
Target:  5'- cGAGACGCUGCUGGAg----GCGGGCGc -3'
miRNA:   3'- -CUUUGCGGCGAUUUgaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 42889 0.76 0.665262
Target:  5'- cGggGCGCCGCcgAGGuCUUCgaGCGGGCu -3'
miRNA:   3'- -CuuUGCGGCGa-UUU-GAAGa-UGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 41515 0.75 0.728535
Target:  5'- uGAGAUGCCGCgcauUUUCUGCGGaGCu -3'
miRNA:   3'- -CUUUGCGGCGauuuGAAGAUGCC-CGc -5'
25941 3' -50.4 NC_005337.1 + 126865 0.75 0.747992
Target:  5'- cGGACGCCGCUGcACcUCUGCGugcucguGGCGa -3'
miRNA:   3'- cUUUGCGGCGAUuUGaAGAUGC-------CCGC- -5'
25941 3' -50.4 NC_005337.1 + 116322 0.74 0.788504
Target:  5'- uGGAGCGgUGCgu-GCUgCUGCGGGCGc -3'
miRNA:   3'- -CUUUGCgGCGauuUGAaGAUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 37641 0.73 0.825527
Target:  5'- cAGGCGCCGCggucGGGCUUCaccgcgAUGGGCa -3'
miRNA:   3'- cUUUGCGGCGa---UUUGAAGa-----UGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 107182 0.73 0.842914
Target:  5'- gGAGAUGCCGCUGGACUUCgu--GGUc -3'
miRNA:   3'- -CUUUGCGGCGAUUUGAAGaugcCCGc -5'
25941 3' -50.4 NC_005337.1 + 42519 0.72 0.851296
Target:  5'- gGAGACGgacaugguguucCCGCcGGACgcgCUGCGGGCGc -3'
miRNA:   3'- -CUUUGC------------GGCGaUUUGaa-GAUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 91194 0.72 0.851296
Target:  5'- cGGGCGCCGCgauGCgg--ACGGGCGc -3'
miRNA:   3'- cUUUGCGGCGauuUGaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 25276 0.72 0.859459
Target:  5'- --cGCGgCGCUGGAgUUCgcgcgcacgGCGGGCGg -3'
miRNA:   3'- cuuUGCgGCGAUUUgAAGa--------UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 6552 0.71 0.91613
Target:  5'- --uGCGCCGgaAGACUUCcgcUACGGcGCa -3'
miRNA:   3'- cuuUGCGGCgaUUUGAAG---AUGCC-CGc -5'
25941 3' -50.4 NC_005337.1 + 126830 0.71 0.889784
Target:  5'- cGGACGCCGacgUGAACUUCcg-GGGCGa -3'
miRNA:   3'- cUUUGCGGCg--AUUUGAAGaugCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.