miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25941 3' -50.4 NC_005337.1 + 1018 0.66 0.991489
Target:  5'- uGGAgGCCGUcGAAUUUCacuuugcgcgggagGCGGGCGg -3'
miRNA:   3'- cUUUgCGGCGaUUUGAAGa-------------UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 16818 0.66 0.991005
Target:  5'- gGAGGCGuuGCUGuACagaggGCGGGUGu -3'
miRNA:   3'- -CUUUGCggCGAUuUGaaga-UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 122289 0.66 0.991005
Target:  5'- cGGGACGCgGagGAGCUccgCgagGCGGGCGu -3'
miRNA:   3'- -CUUUGCGgCgaUUUGAa--Ga--UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 121454 0.66 0.991005
Target:  5'- ---cUGCUGCUGGAC----GCGGGCGc -3'
miRNA:   3'- cuuuGCGGCGAUUUGaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 109175 0.66 0.989699
Target:  5'- --cGCGCCGCgccGC----GCGGGCGg -3'
miRNA:   3'- cuuUGCGGCGauuUGaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 18656 0.66 0.989699
Target:  5'- --cGCGCCGCc--GCcg--GCGGGCGg -3'
miRNA:   3'- cuuUGCGGCGauuUGaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 1170 0.66 0.989137
Target:  5'- cGGAGCGgcCCGCUAGGCggugcgcgagcgCggcACGGGCGc -3'
miRNA:   3'- -CUUUGC--GGCGAUUUGaa----------Ga--UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 109678 0.67 0.988847
Target:  5'- --cGCGCCGaaggccacGAGCUcgauggucugcucgcUCUugGGGCGg -3'
miRNA:   3'- cuuUGCGGCga------UUUGA---------------AGAugCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 92764 0.67 0.98825
Target:  5'- cGGAugGCCGCgcgGAugcGCUccaUC-GCGGGCc -3'
miRNA:   3'- -CUUugCGGCGa--UU---UGA---AGaUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 95159 0.67 0.98825
Target:  5'- cGAGCGCaCGCUgcccgcGAGCUUCcGCGccacGGCGa -3'
miRNA:   3'- cUUUGCG-GCGA------UUUGAAGaUGC----CCGC- -5'
25941 3' -50.4 NC_005337.1 + 77400 0.67 0.98825
Target:  5'- -cGGCGCCGCgggAggUggaUgUGCGGGCc -3'
miRNA:   3'- cuUUGCGGCGa--UuuGa--AgAUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 34702 0.67 0.986647
Target:  5'- cGAAGCGCCGCacGAGCagCcGCaGGGCc -3'
miRNA:   3'- -CUUUGCGGCGa-UUUGaaGaUG-CCCGc -5'
25941 3' -50.4 NC_005337.1 + 56418 0.67 0.986647
Target:  5'- --uAC-CUGCUGGGCacCUACGGGCa -3'
miRNA:   3'- cuuUGcGGCGAUUUGaaGAUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 16999 0.67 0.986647
Target:  5'- cGGGACcCCGCc-GACUcgucggggUCUGCGGGCc -3'
miRNA:   3'- -CUUUGcGGCGauUUGA--------AGAUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 22947 0.67 0.986647
Target:  5'- uGGACGCCaGCUGGGCacgCUG-GGGCu -3'
miRNA:   3'- cUUUGCGG-CGAUUUGaa-GAUgCCCGc -5'
25941 3' -50.4 NC_005337.1 + 57560 0.67 0.986647
Target:  5'- ----gGCUGCUGcuCUUCcacgagACGGGCGu -3'
miRNA:   3'- cuuugCGGCGAUuuGAAGa-----UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 19970 0.67 0.985961
Target:  5'- -cGGCGCCGCgaGAGCUccuccaggagguccUCgggcagcacgugcUGCGGGCGg -3'
miRNA:   3'- cuUUGCGGCGa-UUUGA--------------AG-------------AUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 52019 0.67 0.985429
Target:  5'- cGAAcGCGCCGCUcuccaucggaggcAACUUCUccugcacggcggagGCGGGCc -3'
miRNA:   3'- -CUU-UGCGGCGAu------------UUGAAGA--------------UGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 115217 0.67 0.984882
Target:  5'- cGGGCGCUGCUGAAg----AUGGGCGc -3'
miRNA:   3'- cUUUGCGGCGAUUUgaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 108300 0.67 0.984882
Target:  5'- --cAUGCUGCUGcGCUcCUuccuggacgcGCGGGCGa -3'
miRNA:   3'- cuuUGCGGCGAUuUGAaGA----------UGCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.