miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25941 5' -52.9 NC_005337.1 + 132278 0.66 0.973219
Target:  5'- aCCCggacaagCCGCAGcuGAcGCCCGAcccggcgugcacgGCGGCGg -3'
miRNA:   3'- -GGGaga----GGUGUU--UU-CGGGCU-------------UGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 69033 0.66 0.96431
Target:  5'- uCCgUCUCCGaggcGAGCCgcaGGGCGGUGg -3'
miRNA:   3'- -GGgAGAGGUguu-UUCGGg--CUUGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 101066 0.66 0.960807
Target:  5'- cUCCUCUgagaggcgcgccCCGCcgucggGAGGGCCCGucCGGCGc -3'
miRNA:   3'- -GGGAGA------------GGUG------UUUUCGGGCuuGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 123556 0.66 0.970648
Target:  5'- gCCCUgaCCACAu-GGCCgUGGAC-GCGg -3'
miRNA:   3'- -GGGAgaGGUGUuuUCGG-GCUUGuCGC- -5'
25941 5' -52.9 NC_005337.1 + 112108 0.66 0.960807
Target:  5'- gCCCggccUUCUGCAGGAGCgUGAACAGg- -3'
miRNA:   3'- -GGGa---GAGGUGUUUUCGgGCUUGUCgc -5'
25941 5' -52.9 NC_005337.1 + 66037 0.66 0.967589
Target:  5'- gUCCUCUUCGuggAGGAGCCCcaGGGgAGCGa -3'
miRNA:   3'- -GGGAGAGGUg--UUUUCGGG--CUUgUCGC- -5'
25941 5' -52.9 NC_005337.1 + 74120 0.66 0.967589
Target:  5'- gCCUggUCCGCAAcGGCgCCGuguacucgcacGGCAGCGa -3'
miRNA:   3'- -GGGagAGGUGUUuUCG-GGC-----------UUGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 110763 0.66 0.970648
Target:  5'- gCCUCUUCuuc-GAGCCCGGAUGGaCa -3'
miRNA:   3'- gGGAGAGGuguuUUCGGGCUUGUC-Gc -5'
25941 5' -52.9 NC_005337.1 + 8064 0.66 0.967589
Target:  5'- gCCUcCUCCGCGAccGCgaGGACGcGCGa -3'
miRNA:   3'- gGGA-GAGGUGUUuuCGggCUUGU-CGC- -5'
25941 5' -52.9 NC_005337.1 + 66792 0.66 0.973494
Target:  5'- gUCUCcagCCGCGAGAcGCCCucGAcgaaGCGGCGg -3'
miRNA:   3'- gGGAGa--GGUGUUUU-CGGG--CU----UGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 96860 0.66 0.970648
Target:  5'- cCCCggCUCCGCGAcuccGCgCGGaugcGCGGCGu -3'
miRNA:   3'- -GGGa-GAGGUGUUuu--CGgGCU----UGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 37764 0.66 0.967589
Target:  5'- aCCUUCUCgcgcaGCGAGGGCuuGAagaaguacaugaGCGGCa -3'
miRNA:   3'- -GGGAGAGg----UGUUUUCGggCU------------UGUCGc -5'
25941 5' -52.9 NC_005337.1 + 59674 0.66 0.962936
Target:  5'- gCCCgcgagcacgacCCGgGAGAGCCCGAGCcGCu -3'
miRNA:   3'- -GGGaga--------GGUgUUUUCGGGCUUGuCGc -5'
25941 5' -52.9 NC_005337.1 + 19968 0.66 0.962236
Target:  5'- aCCggcgCCGCGAGAGCUccuccaggagguccuCGGGCAGCa -3'
miRNA:   3'- gGGaga-GGUGUUUUCGG---------------GCUUGUCGc -5'
25941 5' -52.9 NC_005337.1 + 73878 0.66 0.96431
Target:  5'- -gCUCauggCCACGGAcaucgaggucuGCCUGGGCAGCGa -3'
miRNA:   3'- ggGAGa---GGUGUUUu----------CGGGCUUGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 50343 0.66 0.965649
Target:  5'- gCUUCUCCaagaaccccacgccgGCGGAgacgGGCCCGGGCAcggGCGc -3'
miRNA:   3'- gGGAGAGG---------------UGUUU----UCGGGCUUGU---CGC- -5'
25941 5' -52.9 NC_005337.1 + 102994 0.66 0.96431
Target:  5'- cCCCUCgg-ACGu--GCCCGAGC-GCGg -3'
miRNA:   3'- -GGGAGaggUGUuuuCGGGCUUGuCGC- -5'
25941 5' -52.9 NC_005337.1 + 58486 0.66 0.960807
Target:  5'- gCCUCcagCCGCuccAGCagcuuaaCGAGCGGCGg -3'
miRNA:   3'- gGGAGa--GGUGuuuUCGg------GCUUGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 23730 0.66 0.96431
Target:  5'- aCCUUCgacaCgGCAAAacacAGCCUGGugGGCGc -3'
miRNA:   3'- -GGGAGa---GgUGUUU----UCGGGCUugUCGC- -5'
25941 5' -52.9 NC_005337.1 + 45919 0.66 0.96397
Target:  5'- cCCCUUUggaCCAgGAagucgcaGAGCCUGGAgAGCGc -3'
miRNA:   3'- -GGGAGA---GGUgUU-------UUCGGGCUUgUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.