Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25942 | 3' | -56.2 | NC_005337.1 | + | 108535 | 0.66 | 0.888529 |
Target: 5'- -gACggcgCGACG-GUGCGGggcGCgCGCCu -3' miRNA: 3'- gaUGaa--GCUGCaCACGCCa--CG-GCGGu -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 91647 | 0.66 | 0.881573 |
Target: 5'- -aGCcgUCGACcaccGCGGUGCCGCaCAu -3' miRNA: 3'- gaUGa-AGCUGcacaCGCCACGGCG-GU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 92672 | 0.66 | 0.878728 |
Target: 5'- aCUGCUUCGACGUGcucaccuuccuggGCGGcGgCGaCCu -3' miRNA: 3'- -GAUGAAGCUGCACa------------CGCCaCgGC-GGu -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 62936 | 0.66 | 0.864734 |
Target: 5'- gUAC-UCGAUGuUGUGCaccgccgccgcgcgGGUcGCCGCCGa -3' miRNA: 3'- gAUGaAGCUGC-ACACG--------------CCA-CGGCGGU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 108128 | 0.66 | 0.859383 |
Target: 5'- -cGCUggUCGGCGUG-GUGGUGuCCGaCAa -3' miRNA: 3'- gaUGA--AGCUGCACaCGCCAC-GGCgGU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 69099 | 0.66 | 0.859383 |
Target: 5'- uCUACcUCGugGUGcaccucgucUGCGGgcgaGCCGCg- -3' miRNA: 3'- -GAUGaAGCugCAC---------ACGCCa---CGGCGgu -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 24052 | 0.66 | 0.859383 |
Target: 5'- gUGCUcgggCGACGcGgccGCGGccgcgGCCGCCAu -3' miRNA: 3'- gAUGAa---GCUGCaCa--CGCCa----CGGCGGU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 88238 | 0.66 | 0.895256 |
Target: 5'- gCUGCUgcgaaGACGUcGUGCG-UGCCGgCGc -3' miRNA: 3'- -GAUGAag---CUGCA-CACGCcACGGCgGU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 58040 | 0.66 | 0.895256 |
Target: 5'- gCU-CUUCGACGgcgGC-GUGCuCGCCAa -3' miRNA: 3'- -GAuGAAGCUGCacaCGcCACG-GCGGU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 130748 | 0.66 | 0.888529 |
Target: 5'- -cGCUgggucCGACGUGUGCaccGUGgacgcCCGCCAc -3' miRNA: 3'- gaUGAa----GCUGCACACGc--CAC-----GGCGGU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 32210 | 0.66 | 0.888529 |
Target: 5'- -aGCUucUCGAUGgacUGCuuguugaugaaGGUGCCGCCGa -3' miRNA: 3'- gaUGA--AGCUGCac-ACG-----------CCACGGCGGU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 84397 | 0.66 | 0.894594 |
Target: 5'- gCUGCUacaUgGACaucGUGCGGcugcugaUGCCGCCGg -3' miRNA: 3'- -GAUGA---AgCUGca-CACGCC-------ACGGCGGU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 59337 | 0.66 | 0.859383 |
Target: 5'- gUACUUCGAgGacgaccacugGUGCGcG-GCCGCCu -3' miRNA: 3'- gAUGAAGCUgCa---------CACGC-CaCGGCGGu -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 73454 | 0.66 | 0.888529 |
Target: 5'- --uCUUCG-CGcG-GCGGUGCCGCg- -3' miRNA: 3'- gauGAAGCuGCaCaCGCCACGGCGgu -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 57368 | 0.66 | 0.888529 |
Target: 5'- -aACUUCGAguuCGUGUGCcucGGcgagcUGCUGCCc -3' miRNA: 3'- gaUGAAGCU---GCACACG---CC-----ACGGCGGu -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 118761 | 0.66 | 0.887844 |
Target: 5'- gCUGCUgcgCGACGUccuagaugacgccGgcgGCGGcGCCGUCGu -3' miRNA: 3'- -GAUGAa--GCUGCA-------------Ca--CGCCaCGGCGGU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 18636 | 0.67 | 0.843542 |
Target: 5'- -cACUccUCGGCGaUG-GCGGccgcGCCGCCGc -3' miRNA: 3'- gaUGA--AGCUGC-ACaCGCCa---CGGCGGU- -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 55207 | 0.67 | 0.843542 |
Target: 5'- -aGCUUCGugGUG-GCGc-GCCGCa- -3' miRNA: 3'- gaUGAAGCugCACaCGCcaCGGCGgu -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 128500 | 0.67 | 0.818344 |
Target: 5'- gUGCgucgCGuACGUGgucgcGCGGcUGCCGCCc -3' miRNA: 3'- gAUGaa--GC-UGCACa----CGCC-ACGGCGGu -5' |
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25942 | 3' | -56.2 | NC_005337.1 | + | 94020 | 0.68 | 0.782393 |
Target: 5'- cCUACUgucUCGugGUGgcgcggcGCGGcGCgGCCGa -3' miRNA: 3'- -GAUGA---AGCugCACa------CGCCaCGgCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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