miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25942 5' -63 NC_005337.1 + 929 0.66 0.599217
Target:  5'- cGGCGGCGagGCGGCGGAgCgCGgaCa- -3'
miRNA:   3'- -CUGCCGCggCGCCGCCUgG-GCaaGcu -5'
25942 5' -63 NC_005337.1 + 57269 0.66 0.599217
Target:  5'- cACGGgGCCGC-GCGGGgCCGgcgCGc -3'
miRNA:   3'- cUGCCgCGGCGcCGCCUgGGCaa-GCu -5'
25942 5' -63 NC_005337.1 + 127369 0.66 0.599217
Target:  5'- -cUGcGCGCCG-GcGCGGACCCGcgCGc -3'
miRNA:   3'- cuGC-CGCGGCgC-CGCCUGGGCaaGCu -5'
25942 5' -63 NC_005337.1 + 35636 0.66 0.593392
Target:  5'- uGACGagcaucaggagggucGCGCCGaCGGCGGuCCCGa---- -3'
miRNA:   3'- -CUGC---------------CGCGGC-GCCGCCuGGGCaagcu -5'
25942 5' -63 NC_005337.1 + 45738 0.66 0.589514
Target:  5'- uGACGGCGCCGUcuaGCacGGCCCcgcGUUCGu -3'
miRNA:   3'- -CUGCCGCGGCGc--CGc-CUGGG---CAAGCu -5'
25942 5' -63 NC_005337.1 + 127890 0.66 0.589514
Target:  5'- cGCGGCGCCgGCGaGCGcGugCgGgcCGAg -3'
miRNA:   3'- cUGCCGCGG-CGC-CGC-CugGgCaaGCU- -5'
25942 5' -63 NC_005337.1 + 44507 0.66 0.589514
Target:  5'- cGACGcgcaacucGCGCuCGCGGCGGAgCUccUCGGc -3'
miRNA:   3'- -CUGC--------CGCG-GCGCCGCCUgGGcaAGCU- -5'
25942 5' -63 NC_005337.1 + 4133 0.66 0.589514
Target:  5'- cGCGaGCGCCaGCGcGCGcGACCaCGUacgCGAc -3'
miRNA:   3'- cUGC-CGCGG-CGC-CGC-CUGG-GCAa--GCU- -5'
25942 5' -63 NC_005337.1 + 33680 0.66 0.589514
Target:  5'- --aGGCGCCGaggcCGGCGGGCgCCaccuccUCGAa -3'
miRNA:   3'- cugCCGCGGC----GCCGCCUG-GGca----AGCU- -5'
25942 5' -63 NC_005337.1 + 91904 0.66 0.583705
Target:  5'- cGACGGuCGCCGggaugagguacgaguUGGCGGACuuGUcCa- -3'
miRNA:   3'- -CUGCC-GCGGC---------------GCCGCCUGggCAaGcu -5'
25942 5' -63 NC_005337.1 + 44643 0.66 0.579838
Target:  5'- uGAuCGuGCGCCGCaGCGGGCgcuaCGUgggCGAc -3'
miRNA:   3'- -CU-GC-CGCGGCGcCGCCUGg---GCAa--GCU- -5'
25942 5' -63 NC_005337.1 + 80367 0.66 0.579838
Target:  5'- cGCGuucGCGCCGgucGCGGACCCGgUCGu -3'
miRNA:   3'- cUGC---CGCGGCgc-CGCCUGGGCaAGCu -5'
25942 5' -63 NC_005337.1 + 91886 0.66 0.579838
Target:  5'- -cCGcGCGCCGCGGCGccUCCGggUCGc -3'
miRNA:   3'- cuGC-CGCGGCGCCGCcuGGGCa-AGCu -5'
25942 5' -63 NC_005337.1 + 29182 0.66 0.579838
Target:  5'- -cCGGagaCGCGGCGGcGCCCGUgcCGAa -3'
miRNA:   3'- cuGCCgcgGCGCCGCC-UGGGCAa-GCU- -5'
25942 5' -63 NC_005337.1 + 15477 0.66 0.579838
Target:  5'- cGACGGCGCgCGCGGCacgacGGCgCCGccgcCGGc -3'
miRNA:   3'- -CUGCCGCG-GCGCCGc----CUG-GGCaa--GCU- -5'
25942 5' -63 NC_005337.1 + 71322 0.66 0.579838
Target:  5'- cGGCGGCGaCCcgcgcgGCGGCGGugCacaacaUCGAg -3'
miRNA:   3'- -CUGCCGC-GG------CGCCGCCugGgca---AGCU- -5'
25942 5' -63 NC_005337.1 + 56889 0.66 0.578872
Target:  5'- cGCGGCGCCggcugguguuGCGGCaccgcgGGAUCCGgggcuacUUCGGg -3'
miRNA:   3'- cUGCCGCGG----------CGCCG------CCUGGGC-------AAGCU- -5'
25942 5' -63 NC_005337.1 + 10262 0.66 0.578872
Target:  5'- --gGGCGCCuccaucgGCGGCGG-CgCGUUCa- -3'
miRNA:   3'- cugCCGCGG-------CGCCGCCuGgGCAAGcu -5'
25942 5' -63 NC_005337.1 + 109171 0.66 0.570196
Target:  5'- cGCGcGCGCCGCgccgcgcgGGCGGAgCUCGgcgUCGc -3'
miRNA:   3'- cUGC-CGCGGCG--------CCGCCU-GGGCa--AGCu -5'
25942 5' -63 NC_005337.1 + 66081 0.66 0.570196
Target:  5'- cGCGGcCGCgGCGGCGGagGCgCUGUgCGGc -3'
miRNA:   3'- cUGCC-GCGgCGCCGCC--UG-GGCAaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.