miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25943 3' -54.5 NC_005337.1 + 100749 0.66 0.950308
Target:  5'- gCGACGaCG-CGUGCAGccgGCgcacgGCGGAGa -3'
miRNA:   3'- gGCUGCaGUaGUACGUCa--CG-----CGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 127817 0.66 0.950308
Target:  5'- gCUGACGUCAaCGUGCGGaGCGUc--- -3'
miRNA:   3'- -GGCUGCAGUaGUACGUCaCGCGccuc -5'
25943 3' -54.5 NC_005337.1 + 15483 0.66 0.946002
Target:  5'- uUGugGUCGUCG-GCGcUGCuGCGGAc -3'
miRNA:   3'- gGCugCAGUAGUaCGUcACG-CGCCUc -5'
25943 3' -54.5 NC_005337.1 + 126202 0.66 0.946002
Target:  5'- gCCGuCGcgCGUCcucGCGGU-CGCGGAGg -3'
miRNA:   3'- -GGCuGCa-GUAGua-CGUCAcGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 68391 0.66 0.946002
Target:  5'- gCGACGUCcgCccUGCGcgcGUGCGUGGuAGc -3'
miRNA:   3'- gGCUGCAGuaGu-ACGU---CACGCGCC-UC- -5'
25943 3' -54.5 NC_005337.1 + 5118 0.66 0.941458
Target:  5'- aUGACGUCAgugcGCGGgugucugGUGUGGAGg -3'
miRNA:   3'- gGCUGCAGUaguaCGUCa------CGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 92879 0.66 0.941458
Target:  5'- gCCgGACGUCAUC-UGCccgcGCGCGGu- -3'
miRNA:   3'- -GG-CUGCAGUAGuACGuca-CGCGCCuc -5'
25943 3' -54.5 NC_005337.1 + 107069 0.66 0.941458
Target:  5'- gCGGCGgcgCGcCAgggggUGCcgcuGUGCGCGGAGc -3'
miRNA:   3'- gGCUGCa--GUaGU-----ACGu---CACGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 19694 0.66 0.941458
Target:  5'- aCUGACcUCAUCGUGUgc-GgGCGGGGg -3'
miRNA:   3'- -GGCUGcAGUAGUACGucaCgCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 42145 0.66 0.936672
Target:  5'- gCGAUG-CAcCAUGUGGaggGCGCGGAa -3'
miRNA:   3'- gGCUGCaGUaGUACGUCa--CGCGCCUc -5'
25943 3' -54.5 NC_005337.1 + 122193 0.66 0.931645
Target:  5'- cCCG-CGccUCAUCGccGCGG-GCGCGGAc -3'
miRNA:   3'- -GGCuGC--AGUAGUa-CGUCaCGCGCCUc -5'
25943 3' -54.5 NC_005337.1 + 13908 0.66 0.931645
Target:  5'- aCCaGCGUCAUCGUcggGUcGUGgGCGGGc -3'
miRNA:   3'- -GGcUGCAGUAGUA---CGuCACgCGCCUc -5'
25943 3' -54.5 NC_005337.1 + 132103 0.66 0.931645
Target:  5'- gCCGuGCG-CGUCGgcGCcGUGCGCGGcAGg -3'
miRNA:   3'- -GGC-UGCaGUAGUa-CGuCACGCGCC-UC- -5'
25943 3' -54.5 NC_005337.1 + 95778 0.66 0.931645
Target:  5'- gCGACGUCGUCGgccagcucgGCGacGCGCGGc- -3'
miRNA:   3'- gGCUGCAGUAGUa--------CGUcaCGCGCCuc -5'
25943 3' -54.5 NC_005337.1 + 131192 0.66 0.931645
Target:  5'- gCUGGcCGUCGcCGa--GGUGCGCGGAGu -3'
miRNA:   3'- -GGCU-GCAGUaGUacgUCACGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 74789 0.66 0.928512
Target:  5'- uUCGACGcCAUCAucuucaccggggaccUGCGccucuccaGCGCGGAGg -3'
miRNA:   3'- -GGCUGCaGUAGU---------------ACGUca------CGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 30479 0.66 0.926374
Target:  5'- aUGAgGUCGgugagCuUGaCGGUGUGCGGGGg -3'
miRNA:   3'- gGCUgCAGUa----GuAC-GUCACGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 103984 0.66 0.924746
Target:  5'- aUCGACGUCAaCGgcGUGGUGCGCcugaacgccuuccuGGAGc -3'
miRNA:   3'- -GGCUGCAGUaGUa-CGUCACGCG--------------CCUC- -5'
25943 3' -54.5 NC_005337.1 + 31260 0.67 0.92086
Target:  5'- uCCGGCaG-CGg-AUGCGGUGCGCcagGGAGg -3'
miRNA:   3'- -GGCUG-CaGUagUACGUCACGCG---CCUC- -5'
25943 3' -54.5 NC_005337.1 + 1673 0.67 0.92086
Target:  5'- gCCGccGCGUCGU--UGCGGUGCcCGGuGg -3'
miRNA:   3'- -GGC--UGCAGUAguACGUCACGcGCCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.