miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25943 3' -54.5 NC_005337.1 + 3251 0.68 0.882733
Target:  5'- gCGcACGccUUGUCGuUGCGGUGCGCGGcGg -3'
miRNA:   3'- gGC-UGC--AGUAGU-ACGUCACGCGCCuC- -5'
25943 3' -54.5 NC_005337.1 + 12694 0.71 0.715562
Target:  5'- cCCGGCGcgCGUaCAUGCGGUGCuCGGcGa -3'
miRNA:   3'- -GGCUGCa-GUA-GUACGUCACGcGCCuC- -5'
25943 3' -54.5 NC_005337.1 + 69477 0.71 0.725565
Target:  5'- uCCGGCGUC---GUGCcGccGCGCGGAGg -3'
miRNA:   3'- -GGCUGCAGuagUACGuCa-CGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 60265 0.69 0.810761
Target:  5'- gCCGGaGUCGgg--GCAG-GCGCGGGGg -3'
miRNA:   3'- -GGCUgCAGUaguaCGUCaCGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 88927 0.69 0.819522
Target:  5'- gCUGAcCGUCGUCugcgagcucGCGGaccGCGCGGAGg -3'
miRNA:   3'- -GGCU-GCAGUAGua-------CGUCa--CGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 15706 0.69 0.828109
Target:  5'- aCGACGUgccggaCGUCGUGCGa-GCGCGcGAGg -3'
miRNA:   3'- gGCUGCA------GUAGUACGUcaCGCGC-CUC- -5'
25943 3' -54.5 NC_005337.1 + 103848 0.68 0.868174
Target:  5'- -gGACGgCAUCAUccucaagcgGCAGUuCGCGGAGc -3'
miRNA:   3'- ggCUGCaGUAGUA---------CGUCAcGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 88255 0.68 0.874835
Target:  5'- aCGACGUCGcCAUGUuucagccGGUGC-CGGAc -3'
miRNA:   3'- gGCUGCAGUaGUACG-------UCACGcGCCUc -5'
25943 3' -54.5 NC_005337.1 + 11331 0.68 0.880606
Target:  5'- gCGGCGUCGUCGcgGCcggggauggagaagAGccGCGUGGAGa -3'
miRNA:   3'- gGCUGCAGUAGUa-CG--------------UCa-CGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 38458 0.71 0.715562
Target:  5'- -aGGCGUacgccuUCAUGCGGUGCGCGccGGGc -3'
miRNA:   3'- ggCUGCAgu----AGUACGUCACGCGC--CUC- -5'
25943 3' -54.5 NC_005337.1 + 40039 0.72 0.69535
Target:  5'- gCgGGCGUCGUC--GCGGUGCGCcgaaccGGGGa -3'
miRNA:   3'- -GgCUGCAGUAGuaCGUCACGCG------CCUC- -5'
25943 3' -54.5 NC_005337.1 + 52097 0.72 0.674923
Target:  5'- cCCGGCGgCcgCGUGCAgGUGCGCGa-- -3'
miRNA:   3'- -GGCUGCaGuaGUACGU-CACGCGCcuc -5'
25943 3' -54.5 NC_005337.1 + 48293 0.76 0.473181
Target:  5'- cCCGcggucGCGccUCcgCAUGCGGUGCGCGGGc -3'
miRNA:   3'- -GGC-----UGC--AGuaGUACGUCACGCGCCUc -5'
25943 3' -54.5 NC_005337.1 + 60184 0.75 0.482708
Target:  5'- aCGugGUCAcCcUGCGGgugcgGCGCGGGGg -3'
miRNA:   3'- gGCugCAGUaGuACGUCa----CGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 60885 0.74 0.582217
Target:  5'- uCCGGCGuuUCGUCggGCGuGUGUGCGGGc -3'
miRNA:   3'- -GGCUGC--AGUAGuaCGU-CACGCGCCUc -5'
25943 3' -54.5 NC_005337.1 + 90006 0.74 0.582217
Target:  5'- gUGACGUCGUCcaGCA--GCGCGGAGa -3'
miRNA:   3'- gGCUGCAGUAGuaCGUcaCGCGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 122452 0.73 0.613061
Target:  5'- gCCGACuUCAUCGcGCAGUGCGaGGcAGa -3'
miRNA:   3'- -GGCUGcAGUAGUaCGUCACGCgCC-UC- -5'
25943 3' -54.5 NC_005337.1 + 79672 0.73 0.613061
Target:  5'- aUGACGUCGUUcgGCgaGGUGCccGUGGAGa -3'
miRNA:   3'- gGCUGCAGUAGuaCG--UCACG--CGCCUC- -5'
25943 3' -54.5 NC_005337.1 + 91536 0.73 0.633709
Target:  5'- -aGGCGUCgGUCA-GCAGcGCGCGGAu -3'
miRNA:   3'- ggCUGCAG-UAGUaCGUCaCGCGCCUc -5'
25943 3' -54.5 NC_005337.1 + 19415 0.73 0.644036
Target:  5'- gCCGAUGUCGgagacGCGGU-CGCGGAGg -3'
miRNA:   3'- -GGCUGCAGUagua-CGUCAcGCGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.