miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25943 5' -58.2 NC_005337.1 + 31143 0.66 0.810675
Target:  5'- gGACGCuguagagcgCGCGCAcgaugCcgCACUCCGG-GAg -3'
miRNA:   3'- -CUGCG---------GCGCGUa----GuaGUGAGGCCgCU- -5'
25943 5' -58.2 NC_005337.1 + 109180 0.66 0.810675
Target:  5'- cGCGCCGCGCGggCGgaGCUC-GGCGu -3'
miRNA:   3'- cUGCGGCGCGUa-GUagUGAGgCCGCu -5'
25943 5' -58.2 NC_005337.1 + 74898 0.66 0.810675
Target:  5'- gGACGCCGgggGCGUgAUgGCgcggCUGGCGGc -3'
miRNA:   3'- -CUGCGGCg--CGUAgUAgUGa---GGCCGCU- -5'
25943 5' -58.2 NC_005337.1 + 44458 0.66 0.810675
Target:  5'- -cUGCUGCGUGUCGUCGCUCUucaaGCa- -3'
miRNA:   3'- cuGCGGCGCGUAGUAGUGAGGc---CGcu -5'
25943 5' -58.2 NC_005337.1 + 2101 0.66 0.801892
Target:  5'- aGCGCCaGCGCcucCGUCGCgUCCGuGUGGc -3'
miRNA:   3'- cUGCGG-CGCGua-GUAGUG-AGGC-CGCU- -5'
25943 5' -58.2 NC_005337.1 + 78025 0.66 0.801892
Target:  5'- cGCGUCG-GCcUCGUCGg-CCGGCGAc -3'
miRNA:   3'- cUGCGGCgCGuAGUAGUgaGGCCGCU- -5'
25943 5' -58.2 NC_005337.1 + 127016 0.66 0.801892
Target:  5'- --aGCUGCGCGUCGUggagacCAUgCUGGCGGc -3'
miRNA:   3'- cugCGGCGCGUAGUA------GUGaGGCCGCU- -5'
25943 5' -58.2 NC_005337.1 + 70362 0.66 0.801892
Target:  5'- uGCGCCGcCGCAcgUgGUCGCgUCCGuaGAa -3'
miRNA:   3'- cUGCGGC-GCGU--AgUAGUG-AGGCcgCU- -5'
25943 5' -58.2 NC_005337.1 + 95115 0.66 0.801892
Target:  5'- aGGCGCuCGCG-GUCGUC-CUCCaGCGu -3'
miRNA:   3'- -CUGCG-GCGCgUAGUAGuGAGGcCGCu -5'
25943 5' -58.2 NC_005337.1 + 26157 0.66 0.801892
Target:  5'- cACGCCGaccaGCGUC-----UCCGGCGAg -3'
miRNA:   3'- cUGCGGCg---CGUAGuagugAGGCCGCU- -5'
25943 5' -58.2 NC_005337.1 + 84611 0.66 0.801892
Target:  5'- cGACGCCGUggugcuggGCGUCA-CGCUCaCGGaGGu -3'
miRNA:   3'- -CUGCGGCG--------CGUAGUaGUGAG-GCCgCU- -5'
25943 5' -58.2 NC_005337.1 + 14956 0.66 0.801005
Target:  5'- -uCGCCGCGCAUCGUCuccauauCUCguugcacacgcaaCGGaCGGu -3'
miRNA:   3'- cuGCGGCGCGUAGUAGu------GAG-------------GCC-GCU- -5'
25943 5' -58.2 NC_005337.1 + 86729 0.66 0.796549
Target:  5'- --aGUCGCgGCAUCAggcccacgagguccCGCUCCGGCa- -3'
miRNA:   3'- cugCGGCG-CGUAGUa-------------GUGAGGCCGcu -5'
25943 5' -58.2 NC_005337.1 + 5575 0.66 0.792958
Target:  5'- cGCGCCaGcCGCGUCGccagCGCgcgugcCCGGCGGg -3'
miRNA:   3'- cUGCGG-C-GCGUAGUa---GUGa-----GGCCGCU- -5'
25943 5' -58.2 NC_005337.1 + 122191 0.66 0.792958
Target:  5'- uGC-CCGCGCcUCAUCGCcgCgGGCGc -3'
miRNA:   3'- cUGcGGCGCGuAGUAGUGa-GgCCGCu -5'
25943 5' -58.2 NC_005337.1 + 15282 0.66 0.792958
Target:  5'- uGCGCCGCuucacCAUCAugacgaUCACaaCGGCGAu -3'
miRNA:   3'- cUGCGGCGc----GUAGU------AGUGagGCCGCU- -5'
25943 5' -58.2 NC_005337.1 + 98880 0.66 0.792958
Target:  5'- cGCGCCGCGCGcgCGgacugcgCGCUcgagcCCGGgGAg -3'
miRNA:   3'- cUGCGGCGCGUa-GUa------GUGA-----GGCCgCU- -5'
25943 5' -58.2 NC_005337.1 + 16114 0.66 0.792958
Target:  5'- -cCGCCGCgGCGcCGUCAacCUCCauGGCGGc -3'
miRNA:   3'- cuGCGGCG-CGUaGUAGU--GAGG--CCGCU- -5'
25943 5' -58.2 NC_005337.1 + 13488 0.66 0.792056
Target:  5'- cGCGCCGCuccagcuGCAUCccgGUCAC-CCGGaUGAu -3'
miRNA:   3'- cUGCGGCG-------CGUAG---UAGUGaGGCC-GCU- -5'
25943 5' -58.2 NC_005337.1 + 111200 0.66 0.783881
Target:  5'- cGAUGCCGgGCAcggccgCcgCGUUCCGGCGc -3'
miRNA:   3'- -CUGCGGCgCGUa-----GuaGUGAGGCCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.